filip-husnik/pseudofinder
Detection of pseudogene candidates in bacterial and archaeal genomes.
PythonGPL-3.0
Issues
- 0
- 2
Explanation of "no_mercy" in sleuth output
#61 opened by zakisaati - 1
- 1
- 0
- 1
- 3
- 1
- 4
False Postive with known complete gene
#52 opened by LijMeh - 1
refseq blastdb
#53 opened by schmittel - 3
Annotate module
#51 opened by navkahlon240 - 1
Output log file
#50 opened by navkahlon240 - 1
Pseudofinder sleuth is stuck on psl2aln
#48 opened by tandb92 - 2
Error running with diamond database
#49 opened by longleyr - 9
Missing sleuth outputs
#32 opened by rhyman8 - 5
python :: ensure intrerpreter to use
#45 opened by EricDeveaud - 2
Bug with -ce flag
#47 opened by liamfriar - 0
- 3
pseudofinder.py test -db /X/Y/Z should not create result directory in same location of test data
#43 opened by EricDeveaud - 1
problem with diamond
#44 opened by EricDeveaud - 1
error when no db index available
#42 opened by EricDeveaud - 1
Error when running visualize
#40 opened by pyongheng - 3
- 3
Pseudogene Names/Annotations
#37 opened by ddf37 - 5
nr database deletion
#41 opened by GraessleT - 2
Sleuth error with specific reference genome
#38 opened by pyongheng - 1
Sleuth.dnd
#35 opened by fasemoreakinyemi - 1
PseudoType.Input.value.indel
#36 opened by happykhan - 4
Sleuth input files
#34 opened by rhyman8 - 2
- 2
Potential duplicate locus tags detected in genome
#31 opened by rhyman8 - 2
running sleuth module
#24 opened by eddykay310 - 2
Pseudogenes at contig edges
#30 opened by gavinmdouglas - 10
Confidence score / database suggestion?
#28 opened by gavinmdouglas - 15
Reportlab Module
#27 opened by ddf37 - 2
- 2
Make Pseudofinder as a conda package
#20 opened by ireneortega - 2
Reportlab Module Issue
#26 opened by ddf37 - 1
- 3
running on shotgun metagenomes + difference between --length_pseudo and --perc_cov
#22 opened by Jigyasa3 - 15
dnds analysis with ref .gbff
#21 opened by eddykay310 - 4
Output gff issues
#25 opened by treitlis - 6
RuntimeError
#19 opened by sarah872 - 3
error with test
#18 opened by vacatkoV - 5
- 10
How to solve it?
#16 opened by life333 - 3
Questions regarding pseudo-finder test
#17 opened by junwkim42 - 3
- 0
intergenic.fasta.blastX_output.tsv and pseudofinder_intergenic.fasta files empty
#6 opened by Arkadiy-Garber - 1
Is it worked for vertebrate?
#7 opened by binlu1981