flo-compbio/galapagos-examples

Galapagos scRNA-Seq clustering examples

Galapagos PBMC clustering example (Python)

• PBMC clustering example (NBviewer)

This repository contains an electronic Python notebook demonstrating the application of the Galapagos clustering workflow to single-cell RNA-Seq PBMC data.

The PBMC dataset analyzed (pbmc_v3_10k_expression.npz) is contained in this repository, in the "data" folder.

A detailed description of Galapagos can be found in the Galapagos paper on bioRxiv (Wagner, 2019)).

For questions, please contact Florian Wagner (florian.wagner@uchicago.edu).