Pinned Repositories
2016-python-gene-expression-workshop
Data and Jupyter notebooks for the workshop "Gene Expression Analysis in Python" (2016)
enhance
ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
enhance-R
ENHANCE: Accurate denoising of single-cell RNA-Seq data (R implementation)
genometools
GenomeTools: Scripts and Classes for Working with Genomic Data
gopca
GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
monet
Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
monet-tutorials
Tutorials on how to use Monet for analyzing single-cell RNA-Seq data
pyaffy
pyAffy: Processing raw data from Affymetrix expression microarrays in Python.
singlecell
SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.
xlmhg
XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
flo-compbio's Repositories
flo-compbio/monet
Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
flo-compbio/pyaffy
pyAffy: Processing raw data from Affymetrix expression microarrays in Python.
flo-compbio/gopca
GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
flo-compbio/xlmhg
XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
flo-compbio/genometools
GenomeTools: Scripts and Classes for Working with Genomic Data
flo-compbio/singlecell
SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.
flo-compbio/2016-python-gene-expression-workshop
Data and Jupyter notebooks for the workshop "Gene Expression Analysis in Python" (2016)
flo-compbio/monet-tutorials
Tutorials on how to use Monet for analyzing single-cell RNA-Seq data
flo-compbio/moana-tutorials
Tutorials for how to use Moana in the form of Jupyter notebooks
flo-compbio/galapagos-examples
Galapagos scRNA-Seq clustering examples
flo-compbio/gopca-demos
GO-PCA demo notebooks
flo-compbio/goparser
GOparser: A Python Framework For Working With Gene Ontology (GO) Terms and Annotations
flo-compbio/enhance
ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
flo-compbio/enhance-R
ENHANCE: Accurate denoising of single-cell RNA-Seq data (R implementation)
flo-compbio/Best-README-Template
An awesome README template to jumpstart your projects!
flo-compbio/conda
OS-agnostic, system-level binary package manager and ecosystem
flo-compbio/flo-compbio.github.io
flo-compbio/MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
flo-compbio/molecular-cross-validation
Calibrate and compare methods for denoising single-cell RNA-seq data
flo-compbio/monet-paper
Datasets used in analyses from the Monet paper
flo-compbio/pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
flo-compbio/python-manylinux-demo
Demo project for building Python wheels for Linux with Travis-CI
flo-compbio/scikit-learn
scikit-learn: machine learning in Python
flo-compbio/singlecell-clustering
Single-cell club clustering data
flo-compbio/SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
flo-compbio/STAR
RNA-seq aligner
flo-compbio/test
flo-compbio/test-page
flo-compbio/test-page2
Build a Jekyll blog in minutes, without touching the command line.
flo-compbio/travtest