flo-compbio

2016-python-gene-expression-workshop

Data and Jupyter notebooks for the workshop "Gene Expression Analysis in Python" (2016)

enhance

ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)

enhance-R

ENHANCE: Accurate denoising of single-cell RNA-Seq data (R implementation)

genometools

GenomeTools: Scripts and Classes for Working with Genomic Data

gopca

GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge

monet

Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces

monet-tutorials

Tutorials on how to use Monet for analyzing single-cell RNA-Seq data

pyaffy

pyAffy: Processing raw data from Affymetrix expression microarrays in Python.

singlecell

SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.

xlmhg

XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.

flo-compbio/monet

Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces

flo-compbio/pyaffy

pyAffy: Processing raw data from Affymetrix expression microarrays in Python.

flo-compbio/gopca

GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge

flo-compbio/xlmhg

XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.

flo-compbio/genometools

GenomeTools: Scripts and Classes for Working with Genomic Data

flo-compbio/singlecell

SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.

flo-compbio/2016-python-gene-expression-workshop

Data and Jupyter notebooks for the workshop "Gene Expression Analysis in Python" (2016)

flo-compbio/monet-tutorials

Tutorials on how to use Monet for analyzing single-cell RNA-Seq data

flo-compbio/moana-tutorials

Tutorials for how to use Moana in the form of Jupyter notebooks

flo-compbio/galapagos-examples

Galapagos scRNA-Seq clustering examples

flo-compbio/gopca-demos

GO-PCA demo notebooks

flo-compbio/goparser

GOparser: A Python Framework For Working With Gene Ontology (GO) Terms and Annotations

flo-compbio/enhance

ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)

flo-compbio/enhance-R

ENHANCE: Accurate denoising of single-cell RNA-Seq data (R implementation)

flo-compbio/Best-README-Template

An awesome README template to jumpstart your projects!

flo-compbio/conda

OS-agnostic, system-level binary package manager and ecosystem

flo-compbio/flo-compbio.github.io

flo-compbio/MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

flo-compbio/molecular-cross-validation

Calibrate and compare methods for denoising single-cell RNA-seq data

flo-compbio/monet-paper

Datasets used in analyses from the Monet paper

flo-compbio/pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

flo-compbio/python-manylinux-demo

Demo project for building Python wheels for Linux with Travis-CI

flo-compbio/scikit-learn

scikit-learn: machine learning in Python

flo-compbio/singlecell-clustering

Single-cell club clustering data

flo-compbio/SingleCellOpenProblems

Formalizing and benchmarking open problems in single-cell genomics

flo-compbio/STAR

RNA-seq aligner

flo-compbio/test

flo-compbio/test-page

flo-compbio/test-page2

Build a Jekyll blog in minutes, without touching the command line.

flo-compbio/travtest