/moana-tutorials

Tutorials for how to use Moana in the form of Jupyter notebooks

Primary LanguageJupyter Notebook

Overview

This repository contains tutorials for how to use the Moana Python package to analyze scRNA-Seq data. Currently, the tutorials only cover some basic functionalities, including data preprocessing, cell type prediction using an existing classifier, and clustering. Additional tutorials showing how you can construct your own Moana classifier are forthcoming.

The repostitory for the Moana Python package is located at https://github.com/yanailab/moana.

Please tweet @flo_compbio for questions.

Tutorials

  1. Preprocess human 10x Genomics data (PBMC-4k)

  2. Predict cell types using a Moana PBMC classifier (PBMC-4k)

  3. Perform clustering for human PBMCs (PBMC-4k)

Interactive versions

To run these tutorials interactively, download this repository, make sure the Moana Python package is installed, and open the notebooks using Jupyter.