flo-compbio

Computational Biologist

10x GenomicsChicago

Pinned Repositories

2016-python-gene-expression-workshop
Data and Jupyter notebooks for the workshop "Gene Expression Analysis in Python" (2016)
Language:Jupyter Notebook9 4 03
enhance
ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
Language:Python0 1 00
enhance-R
ENHANCE: Accurate denoising of single-cell RNA-Seq data (R implementation)
Language:R0 1 00
genometools
GenomeTools: Scripts and Classes for Working with Genomic Data
Language:Python12 3 44
gopca
GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
Language:Python14 3 142
monet
Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
Language:Python39 5 110
monet-tutorials
Tutorials on how to use Monet for analyzing single-cell RNA-Seq data
Language:Jupyter Notebook8 2 05
pyaffy
pyAffy: Processing raw data from Affymetrix expression microarrays in Python.
Language:HTML17 4 164
singlecell
SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.
Language:Python11 2 05
xlmhg
XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.
Language:Python13 3 84

flo-compbio's Repositories

flo-compbio/gopca-server
GO-PCA Web Server
Language:Python2 0
flo-compbio/pyaffy-demos
Demos for the pyAffy Python package
Language:Jupyter Notebook2 0