Pinned Repositories
advanced-bioinformatics-course
This course provides an end-to-end in-depth exploration of bioinformatics analysis of genomic data.
AdventOfCode_2020
My programming puzzles solutions
CMDC-StructuralBioinformatics
Complete tool which calculates correlated mutations and distance correlations to predict aminoacid interactions. It also contains standalone scripts of mutual information calculation and contact map
cxr-img-classifier
An extremely user-friendly Chest X-Ray image classifier using PyTorch Lightning, Hydra and a custom logger with ML best practices.
ML-engineer-interview-task
Predicting rental prices with Machine Learning and Natural Language Processing
nf-exec
Tools to reproduce the steps to run nf-core pipelines for bioinformatics analysis within Linux environments.
phosphoproteomics
Some phosphoproteomics useful notebooks and sources
qsplice
Quantifying splice junctions coverage from data released by STAR and mapping it to genome positions.
trifid
Machine Learning-based tool to assess the functional relevance of splice isoforms.
Chest-X-Ray-with-Radiologist-AI
This repository is intended to diagnose pulmonaries pathologies by using DL tools.
fpozoc's Repositories
fpozoc/trifid
Machine Learning-based tool to assess the functional relevance of splice isoforms.
fpozoc/qsplice
Quantifying splice junctions coverage from data released by STAR and mapping it to genome positions.
fpozoc/advanced-bioinformatics-course
This course provides an end-to-end in-depth exploration of bioinformatics analysis of genomic data.
fpozoc/cxr-img-classifier
An extremely user-friendly Chest X-Ray image classifier using PyTorch Lightning, Hydra and a custom logger with ML best practices.
fpozoc/CMDC-StructuralBioinformatics
Complete tool which calculates correlated mutations and distance correlations to predict aminoacid interactions. It also contains standalone scripts of mutual information calculation and contact map
fpozoc/nf-exec
Tools to reproduce the steps to run nf-core pipelines for bioinformatics analysis within Linux environments.
fpozoc/phosphoproteomics
Some phosphoproteomics useful notebooks and sources
fpozoc/website
fpozoc/AdventOfCode_2020
My programming puzzles solutions
fpozoc/appris_rnaseq
Snakemake pipeline to perform a high-performance batch RNA-seq quantification
fpozoc/Chest-X-Ray-with-Radiologist-AI
This repository is intended to diagnose pulmonaries pathologies by using DL tools.
fpozoc/ML-engineer-interview-task
Predicting rental prices with Machine Learning and Natural Language Processing
fpozoc/covid-rt
Using bayesian statistics to see what is really happening with the SARS-CoV-2 virus one month after COVID19 pandemics start
fpozoc/d3_challenge
Protein–ligand docking protocol
fpozoc/data-driven-project-template
Bringing together both commonly used scripts and a data related project structure
fpozoc/dotfiles
fpozoc's shell, zsh, tmux, git, config files and some stuff for migration
fpozoc/e2e_python_template
This project intends to provide end to end workflow template for Python projects
fpozoc/eccb-22
Materials for the presentation at 21st European Conference on Computational Biology (ECCB)
fpozoc/extractGFFfeatures
Extracting GFF Features from sequences and calculates its GC content.
fpozoc/fpozoc
fpozoc/fpozoc.github.io
fpozoc/hp-pfamscan
HPC implementation of PfamScan
fpozoc/ismb-presentation
Video presentation and poster session prepared for the annual International Conference on Intelligent Systems for Molecular Biology (ISMB) in 2021
fpozoc/market_momentum
Set of scripts for analyzing stock data using technical indicators
fpozoc/ml-project-template
Bringing together both commonly used scripts and a data related project structure
fpozoc/Naive-Bayes-Classifier
A predictive Naïve Bayes Model classifier which try to predict brain regions from its subsequent Splicing Events in Human Genome (GTEX project)
fpozoc/pyops
Python Project template designed for a cool variety of projects
fpozoc/Ratt2Coords
Approaching for a whole Genome Annotation tool. It was created in order to solve some of the requirements of a particular wet-lab