The Fraenkel Lab at MIT
We are developing computational and experimental approaches to search for new therapeutic strategies for diseases.
Cambridge, MA
Pinned Repositories
chipsequtil
Collection of utilities for chipseq and short read analysis
galaxy-neurolincs
The NeuroLINCS Galaxy Flavor
GarNet
GSLR
An algorithm for classification from a graph-sparse support
HD-iPSC-Consortium-NN
Code and data for the 2017 Nature Neuroscience paper by the HD iPSC Consoritum
mogp
Mixture of Gaussian Processes Model for Sparse Longitudinal Data
OmicsIntegrator
This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.
OmicsIntegrator2
Prize-Collecting Steiner Forests for Interactomes
PCSF_analysis
pcst_fast
A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.
The Fraenkel Lab at MIT's Repositories
fraenkel-lab/OmicsIntegrator2
Prize-Collecting Steiner Forests for Interactomes
fraenkel-lab/pcst_fast
A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.
fraenkel-lab/mogp
Mixture of Gaussian Processes Model for Sparse Longitudinal Data
fraenkel-lab/OmicsIntegrator
This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.
fraenkel-lab/GSLR
An algorithm for classification from a graph-sparse support
fraenkel-lab/HD-iPSC-Consortium-NN
Code and data for the 2017 Nature Neuroscience paper by the HD iPSC Consoritum
fraenkel-lab/GarNet
fraenkel-lab/chipsequtil
Collection of utilities for chipseq and short read analysis
fraenkel-lab/galaxy-neurolincs
The NeuroLINCS Galaxy Flavor
fraenkel-lab/PCSF_analysis
fraenkel-lab/imaging-resources
fraenkel-lab/galaxytools
fraenkel-lab/image-preprocessing
fraenkel-lab/neurodegeneration-network
scripts used to generate the analysis and figures in the manuscript An integrative systems-biology approach defines mechanisms of Alzheimer’s disease neurodegeneration, Leventhal et al.
fraenkel-lab/QBD
fraenkel-lab/shh-mben