Is there any way to run this without a dependency on pcst_fast?

Question

Is there any way to run this without a dependency on pcst_fast?

sgosline opened this issue 5 years ago · 4 comments

I can't seem to get pcst_fast installed on a windows machine, is there a way to run this package without the dependency?

Answer 1 · 2020-04-15T01:38:05.000Z

When I was working on this, we could not build wheels on windows, so pcst_fast only works on unix machines. OmicsIntegrator2 only has plugins for pcst_fast as a backend, so sadly, there isn't a way to run it on DOS (as of early 2019)

Answer 2 · 2021-04-06T14:54:18.000Z

@sgosline I have a prototype Docker image for Omics Integrator 2 that I'm using to run it on Windows. I haven't pushed it to Docker Hub, but I can if this is still relevant for you.

Answer 3 · 2021-04-06T14:59:10.000Z

Interesting, I think I might have done this on my own at some point, just never pushed the changes. I'm still going to check out your docker branch, as it's a valuable use case for me.

Answer 4 · 2021-04-06T15:16:38.000Z

The Dockerfile is in a different repo on a branch that is being shuffled around this week. I can point to the more stable location after merging or give you the temporary location if you want it now.