fransua

ecolopy

package to test untb in ecosystems

ete

ETE is a Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

gsea

prognosTF

SerUtils

A bit of everything for everyday use in bioinformatics

slurm_utils

few script to run jobs and monitor

TADbit

GigaSOM.jl

Huge-scale, high-performance flow cytometry clustering in Julia

fransua/slurm_utils

few script to run jobs and monitor

fransua/ecolopy

package to test untb in ecosystems

fransua/gsea

fransua/TADbit

fransua/ete

ETE is a Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

fransua/prognosTF

fransua/SerUtils

A bit of everything for everyday use in bioinformatics

fransua/3DAROC

#DAROC Course, starting in 2016

fransua/Anchor

This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge

fransua/Bojos_supercomputacio

fransua/config-emacs

fransua/course

fransua/ensembl-compara

The Ensembl Compara Perl API and SQL schema

fransua/EpigenomeAnalysisTutorial-2020

This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression

fransua/FindingChromatinLoops

Finding chromatin loops with Homer and HiCCUPS.

fransua/github-markdown-toc

Easy TOC creation for GitHub README.md

fransua/parallel_sequencing_lives

Didactic dataset of the _"Parallel sequencing lives, or what makes large sequencing projects successful"_ manuscript.

fransua/PhD-thesis

My PhD thesis dissertation: Informational, Ecological and System Approaches for Complete Genome Analysis

fransua/py-sha256

experimental pure python implementation of sha256 algorithm

fransua/pyGAM

[HELP REQUESTED] Generalized Additive Models in Python

fransua/pySankey

create sankey diagrams with matplotlib

fransua/python-coveralls

Python API for http://coveralls.io

fransua/RustyChrom

sample split by restriction-enzyme in Rust

fransua/Same-Size-K-Means

A k-means variation that produces clusters of the same size utilizing the scikit-learn API and related utilities

fransua/scVI-3D

fransua/SnapFlow

simple workflow manager in python

fransua/SNPsplit

Allele-specific alignment sorting

fransua/tree_formats

fransua/treematcher

Search flexible patterns within tree structures using regular expression like syntax.

fransua/VRE_tool_jsons

VRE-tool integration