Pinned Repositories
ngphylogeny-django
booster
dockerfiles
Dockerfiles for tools commonly used for phylogenetic analyses
goalign
Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
gotree
Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
golaxy
golaxy : interacting with Galaxy in Go
reprohackathon_ismb2023
rna-pipeline
RNA-Seq pipeline with nextflow and docker
snag
SequeNce simulAtion in Golang
fredericlemoine's Repositories
fredericlemoine/golaxy
golaxy : interacting with Galaxy in Go
fredericlemoine/rna-pipeline
RNA-Seq pipeline with nextflow and docker
fredericlemoine/reprohackathon_ismb2023
fredericlemoine/snag
SequeNce simulAtion in Golang
fredericlemoine/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
fredericlemoine/bammask
fredericlemoine/bioconda-recipes
Conda recipes for the bioconda channel.
fredericlemoine/bitset
Go package implementing bitsets
fredericlemoine/cobrashell
fredericlemoine/condor
ConDor: a workflow to detect convergent evolution in large protein alignments
fredericlemoine/configs
Config files used to define parameters specific to compute environments at different Institutions
fredericlemoine/covseqclade
fredericlemoine/date2epiweek
fredericlemoine/Essai2
fredericlemoine/fastqutils
fredericlemoine/FR-RN
French Reproducibility Network website
fredericlemoine/godocker
fredericlemoine/gostats
fredericlemoine/gota
Gota: DataFrames and data wrangling in Go (Golang)
fredericlemoine/Integron_Finder
Bioinformatics tool to find integrons in bacterial genomes
fredericlemoine/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
fredericlemoine/nextflow
A DSL for data-driven computational pipelines
fredericlemoine/pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
fredericlemoine/PASTML
Prediction of Ancestral STate using the Maximum-Likelihood method
fredericlemoine/phyml
PhyML -- Phylogenetic estimation using (Maximum) Likelihood
fredericlemoine/s3lib
fredericlemoine/Seq-Gen
Sequence simulator
fredericlemoine/SpliceLauncher
RNAseq pipeline for alternative splicing junctions
fredericlemoine/Strainline
Full-length de novo viral haplotype reconstruction from noisy long reads
fredericlemoine/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples