PASTML infers ancestral states on a phylogenetical tree with annotated tips. usage: PASTML -a ANNOTATION_FILE -t TREE_NWK [-m MODEL] [-o OUTPUT_ANNOTATION_FILE] [-n OUTPUT_TREE_NWK] required arguments: -a ANNOTATION_FILE path to the annotation csv file containing tip states -t TREE_NWK path to the tree file (in newick format) optional arguments: -o OUTPUT_ANNOTATION_FILE path where the output annotation csv file containing node states will be created -n OUTPUT_TREE_NWK path where the output tree file will be created (in newick format) -m MODEL state evolution model (JC or F81)