fredjaya
Senior Bioinformatician @AustralianBioCommons and @Sydney-Informatics-Hub
Sydney Informatics HubCanberra, Australia
Pinned Repositories
PoolPoweR
Power and sample size calculations for surveys using pool testing (AKA group testing)
PoolTools
Anlayse and design surveys with pool-tested data: a Shiny interface to PoolTestR and PoolPoweR
cogent3
Comparative Genomics Toolkit 3
5games
Project files for the video "Master Python by making 5 games"
c3_callgraphs
Cogent3 call graphs
c3dev
cogent3 developer tools
chickenpy
Object-oriented cooking simulator
mutscape
Variant calling pipeline to estimate A. m. capensis mutation rates
rec-bench
automated benchmarking of recombination detection methods
spw23_iqtree
IQ-TREE workshop for the Sydney Phylogenetics Workshop 2023
fredjaya's Repositories
fredjaya/rec-bench
automated benchmarking of recombination detection methods
fredjaya/spw23_iqtree
IQ-TREE workshop for the Sydney Phylogenetics Workshop 2023
fredjaya/chickenpy
Object-oriented cooking simulator
fredjaya/mutscape
Variant calling pipeline to estimate A. m. capensis mutation rates
fredjaya/5games
Project files for the video "Master Python by making 5 games"
fredjaya/c3_callgraphs
Cogent3 call graphs
fredjaya/c3dev
cogent3 developer tools
fredjaya/cogent3
Comparative Genomics Toolkit 3
fredjaya/DemoProject
Initial project using click
fredjaya/dotfiles
nix ricing
fredjaya/fredjaya
fredjaya/gmos-sample
Sample files to show different behaviour when identical files are used vs. removing a sequence as a query
fredjaya/gtdb_trees
Application of pandemic-scale tools for building the GTDB tree
fredjaya/MixtureModelHMM
Post-processes the output of phylogenetic mixture models using HMMs
fredjaya/msmc-nf
Nextflow pipeline for demographic reconstruction with MSMC
fredjaya/parrotfish_analyses
Evolutionary analyses of the Parrotfish genome
fredjaya/phasco_genes
Analysis of Koala gene families
fredjaya/PoolPoweR
Power and sample size calculations for surveys using pool testing (AKA group testing)
fredjaya/PoolTools
Anlayse and design surveys with pool-tested data: a Shiny interface to PoolTestR and PoolPoweR
fredjaya/presentations
past workshops, talks, posters
fredjaya/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
fredjaya/scripts
collection of small, assorted scripts
fredjaya/topofind
Finding topologies for MAST
fredjaya/upe-squelchers
Population genetics of Uperoleia frogs
fredjaya/wrassembly
De novo assembly of reef fishes with long and linked reads
fredjaya/zmk-config