Pinned Repositories
BEND
Benchmarking DNA Language Models on Biologically Meaningful Tasks
alphafold-peptide-receptors
Identifying peptide-receptor interactions using AlphaFold-Multimer
DeepPeptide
Predicting cleaved peptides in protein sequences
hf-train-tpu
Train Huggingface LMs on google cloud TPUs.
marcha-local
VersusVirus Hackathon 2020
master-thesis
WIP repo for my thesis
PyTorch-GRU-D
PyTorch Implementation of GRU-D from "Recurrent Neural Networks for Multivariate Time Series with Missing Values" https://arxiv.org/abs/1606.01865
SecretoGen
A conditional generative model for signal peptide design and efficiency prediction
signalp-6.0
Multi-class signal peptide prediction and structure decoding model.
graph-part
GraphPart, a data partitioning method for ML on biological sequences
fteufel's Repositories
fteufel/signalp-6.0
Multi-class signal peptide prediction and structure decoding model.
fteufel/PyTorch-GRU-D
PyTorch Implementation of GRU-D from "Recurrent Neural Networks for Multivariate Time Series with Missing Values" https://arxiv.org/abs/1606.01865
fteufel/alphafold-peptide-receptors
Identifying peptide-receptor interactions using AlphaFold-Multimer
fteufel/DeepPeptide
Predicting cleaved peptides in protein sequences
fteufel/hf-train-tpu
Train Huggingface LMs on google cloud TPUs.
fteufel/SecretoGen
A conditional generative model for signal peptide design and efficiency prediction
fteufel/marcha-local
VersusVirus Hackathon 2020
fteufel/master-thesis
WIP repo for my thesis
fteufel/CNP-TCN
Conditional Neural Process with a TCN as classifier
fteufel/FLEXS
Fitness landscape exploration sandbox for biological sequence design.
fteufel/fteufel.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
fteufel/protein-awd-lstm
Protein LMs compatible with TAPE
fteufel/BEND
Benchmarking DNA Language Models on Biologically Meaningful Tasks
fteufel/GCC-Patch-1.0.2
Updated skeletons for Java, Javascript and Python, as well as new Readme files for each.
fteufel/Google-Sheets-MC-Simulator
Google Apps Script utility to run MC simulations
fteufel/MLOps-hackathon-okt2022
Helper functions for the hackathon organized by DDSA and @SkafteNicki on 19/10/2022
fteufel/ppv
fteufel/SCTransformPy
A python port of the R package SCTransform:
fteufel/slip
SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
fteufel/streamlit-signal-peptides
fteufel/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
fteufel/transformers
🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.