fulcrumgenomics/dagr

Issues

• Scheduling strategies to optimize pipeline performance

  #122 opened 9 years ago
  2

• Pipe should support && and ||

  #121 opened 9 years ago
  5

• Floating point inaccuracy in apply resources (Core)

  #120 opened 9 years ago
  0

• Pipeline should update its name when prefix and suffix are given.

  #119 opened 9 years ago
  0

• Dagr outputs too much common option usage

  #115 opened 9 years ago
  0

• a ==> b should return a new Dependable(a,b), not b

  #107 opened 9 years ago
  0

• Provide a way to specify/configure a temporary directory(s) for tasks to use

  #105 opened 9 years ago
  0

• Use class objects instead of instances for Command groups

  #104 opened 9 years ago
  0

• Consider modifying CommandLineParser to support recursive sub-command parsing

  #103 opened 9 years ago
  0

• Hidden pipelines can't be executed from the command line

  #102 opened 9 years ago
  3

• Improve the way special arguments work in sopt

  #101 opened 8 years ago
  1

• Better status reporting for tasks that dagr kills during shutdown

  #100 opened 9 years ago
  0

• A single character command line option should default to a single dash option

  #96 opened 9 years ago
  4

• Making ClpGroup more scala-esque

  #94 opened 9 years ago
  0

• No more CLP

  #93 opened 9 years ago
  0

• Support pipelines with no arg constructors

  #92 opened 9 years ago
  0

• Consider having a command line option for when dagr should terminate

  #91 opened 9 years ago
  0

• Dagr should support task args with spaces and special characters

  #88 opened 9 years ago
  3

• DNA is capitalized in two of our pipelines

  #86 opened 9 years ago
  0

• Consider the idea of a commons package

  #85 opened 9 years ago
  2

• Produce more helpful output when insufficient resources to run a task

  #78 opened 8 years ago
  1

• Move TaskExecutionInfo into Task

  #76 opened 9 years ago
  1

• Move TaskRunner interface to a trait

  #75 opened 9 years ago
  1

• Migrate from Dates/Timestamps/Duration

  #74 opened 9 years ago
  0

• Replace PeekableIterator.scala with uses of BufferedIterator

  #73 opened 9 years ago
  0

• Stop snapshot publishing to sonatype during travis CI for anything but the master branch

  #69 opened 9 years ago
  1

• Refactor TaskManagerState

  #67 opened 9 years ago
  1

• Dagr does not parse long names followed by an equals sign and value

  #66 opened 9 years ago
  1

• Mis-specified pipeline gives the wrong error message

  #65 opened 9 years ago
  0

• htsjdk and picard needed as dependencies for pipelines

  #62 opened 9 years ago
  1

• Move to managed dependencies for Picard and HTSJDK...

  #59 opened 9 years ago
  1

• Should we make a recipe for dagr in homebrew?

  #58 opened 9 years ago
  1

• Cores and Memory should not define new attributes for their value

  #53 opened 9 years ago
  0

• Decide how arguments files should work and implement/uncomment that code

  #52 opened 9 years ago
  1

• Standardize the output to terminal when Dagr is running

  #46 opened 9 years ago
  1

• Provide an easy way to scatter and gather tasks

  #45 opened 8 years ago
  1

• Web server to show the status of all your tasks and pipelines

  #44 opened 9 years ago
  0

• Provide better support for tasks that want to pipe between multiple commands

  #43 opened 9 years ago
  1

• Tidier command line invocation for scala scripts that contain a single public pipeline class

  #42 opened 9 years ago
  0

• Create a bare-bones example project git repo that can be cloned to start a project

  #41 opened 9 years ago
  0

• Support for scala Enumerations as command line arguments

  #40 opened 9 years ago
  0

• Command line help should automatically show available options for parameters that are enums.

  #39 opened 9 years ago
  1

• Add the ability to restart a failed pipeline from the command line

  #38 opened 9 years ago
  0

• Snapshots should only be published off of master builds

  #35 opened 8 years ago
  1

• Unit test intermittently fails: "resubmit a task that failed and re-run to completion"

  #34 opened 9 years ago
  3

• Badges, badges everywhere

  #20 opened 9 years ago
  2

• Documentation organization

  #19 opened 9 years ago
  2

• summary in CLPAnnotation is never outputted to the command line

  #14 opened 9 years ago
  2

• Coveralls is broken

  #5 opened 9 years ago
  1