Pinned Repositories
dagr
A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
fgbio
Tools for working with genomic and high throughput sequencing data.
fgoxide
Quality of life improvements in Rust.
fgpyo
Quality of life improvements for Bioinformatics in Python.
fgsv
Tools to gather evidence for structural variation via breakpoint detection.
fqgrep
Grep for FASTQ files
fqtk
Fast FASTQ sample demultiplexing in Rust.
guide-counter
A better, faster way to count guides in CRISPR screens.
pybedlite
Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
python-snakemake-template
A template repository for Snakemake pipepline(s) and a python command-line toolkit.
Fulcrum Genomics's Repositories
fulcrumgenomics/fgbio
Tools for working with genomic and high throughput sequencing data.
fulcrumgenomics/fqgrep
Grep for FASTQ files
fulcrumgenomics/fqtk
Fast FASTQ sample demultiplexing in Rust.
fulcrumgenomics/guide-counter
A better, faster way to count guides in CRISPR screens.
fulcrumgenomics/fgpyo
Quality of life improvements for Bioinformatics in Python.
fulcrumgenomics/python-snakemake-template
A template repository for Snakemake pipepline(s) and a python command-line toolkit.
fulcrumgenomics/fgsv
Tools to gather evidence for structural variation via breakpoint detection.
fulcrumgenomics/pybedlite
Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
fulcrumgenomics/prymer
Python Primer Design Library
fulcrumgenomics/sopt
An argument parsing library for Scala
fulcrumgenomics/nf-dotenv
Automatically source dotenv files into your Nextflow scope
fulcrumgenomics/pyfgaws
Python tools and APIs for working with AWS
fulcrumgenomics/stitch
Stitch is a toolkit for analysis of chimeric reads in sequencing data
fulcrumgenomics/fgoxide
Quality of life improvements in Rust.
fulcrumgenomics/setup-latch
fulcrumgenomics/commons
Common scala utilities
fulcrumgenomics/pooled-writer
A pooled writer and compressor library in Rust.
fulcrumgenomics/read-structure
read structures in rust
fulcrumgenomics/.github
fulcrumgenomics/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
fulcrumgenomics/betabinom
Maintained fork of `countdata`
fulcrumgenomics/bwa-aln-interactive
BWA aln interactive: Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
fulcrumgenomics/cargo-ghdoc
View Rustdocs for PRs
fulcrumgenomics/fgprimer
APIs and wrappers for performing PCR primer design related tasks
fulcrumgenomics/latch-snakemake-examples
fulcrumgenomics/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
fulcrumgenomics/pybwa
fulcrumgenomics/regtools
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
fulcrumgenomics/scala-mill-template
A template repo for a Scala project with the build tool Mill
fulcrumgenomics/Sniffles
Structural variation caller using third generation sequencing