Issues
- 0
Cannot release stitch
#64 opened by nh13 - 0
- 0
`NM` is the same for all reads in a chain
#60 opened by jdidion - 1
- 1
Set the CC and CP tags
#21 opened by nh13 - 1
Add the SA SAM tag on the primary to store the other supplementary alignments in the chain
#45 opened by nh13 - 1
- 4
Support input of reads in FASTA
#39 opened by jdidion - 0
Set minimum rust version
#49 opened by jdidion - 0
Fix repository URL in Cargo.toml
#50 opened by jdidion - 4
Ability to align against a multi-contig construct
#56 opened by jdidion - 2
- 0
- 4
Unexpected alignments
#48 opened by jdidion - 0
Additional `PrimaryPickingStrategy`s
#55 opened by jdidion - 0
Utilize the secondary and supplementary flags and custom SAM tags to provide information about chains
#44 opened by nh13 - 2
Add release workflow
#52 opened by jdidion - 0
Rename Alignment to AlignmentChain
#53 opened by nh13 - 0
CLI parsing error for enum types
#34 opened by jdidion - 0
Change name to "stitch"
#36 opened by jdidion - 1
Used a shared reference for target hashes
#33 opened by jdidion - 0
Decouple CLI and lib code
#31 opened by jdidion - 0
Update `seq_io` to `0.3.2`
#28 opened by jdidion - 1
CI checks fail due to Clippy issues
#27 opened by jdidion - 2
Make alignment case-insensitive
#25 opened by jdidion - 0
- 0
Improve traceback memory layout
#20 opened by nh13 - 0
Add an option to align to each contig separately and jointly to pick the highest score
#16 opened by nh13 - 0
Support local alignments of the query that crosses the origin of a circular plasmid
#9 opened by nh13 - 0
- 1
Support multiple reference vector/plasmids
#6 opened by nh13 - 1
Refactor/re-organize code
#2 opened by nh13 - 0
- 0
Support linear reads from circular plasmids
#3 opened by nh13 - 0
Tool to "invert" the alignments
#5 opened by nh13