Issues
- 0
chore: remove the github-actions-ci environment
#180 opened by nh13 - 0
- 0
Add a method on Template to fixmate information
#83 opened by nh13 - 0
- 1
Bug: Incompatible types in assignment with `Metric.read`
#172 opened by nh13 - 1
Feature request: support sequence distance functions
#93 opened by msto - 0
Expand Levenshtein distance calculation functionality
#170 opened by znorgaard - 1
- 1
Should __get_item__() be reverted since it is confusing as to what the i-th entry of a Cigar is?
#169 opened by yfarjoun - 0
- 1
- 8
Feature: SAM tag enum
#102 opened by msto - 1
Metric.write should support excluding attributes
#90 opened by msto - 0
- 0
Add a method to calculate MD and NM tags.
#84 opened by nh13 - 0
Generate code for `SamBuilder` based on an input SAM/BAM
#79 opened by nh13 - 1
Support stdin/stdout in sam.reader and sam.writer
#67 opened by msto - 1
Add code coverage report
#130 opened by msto - 0
- 1
Add a `CONTRIBUTING.md`
#138 opened by msto - 0
Clean up `type: ignore`s
#133 opened by msto - 0
Add lint checks for C901, bugbear, and quotes
#141 opened by msto - 3
Feature request: add __get_item__() to Cigar class
#153 opened by yfarjoun - 0
Move to `ruff`
#139 opened by msto - 0
Update `pyproject.toml`
#137 opened by msto - 0
- 3
Package code and tests should be organized in separate directories, to be more consistent with Python conventions
#120 opened by msto - 0
Use stricter mypy config
#126 opened by msto - 1
Add futures module for clean parallelism
#91 opened by TedBrookings - 3
Use tox so we can test multiple python versions locally
#128 opened by msto - 1
Add `require`
#132 opened by msto - 0
- 0
- 1
- 0
Feature request: UMI extraction from read name
#92 opened by msto - 1
- 1
- 0
Add `as_fastafile` method to `FastaBuilder`
#106 opened by msto - 0
Add a CODEOWNERS
#111 opened by msto - 0
`Metric` should support comma-delimited files
#115 opened by msto - 0
- 0
Consider renaming modules which shadow stdlib modules
#112 opened by msto - 4
Metric wishlist
#104 opened by msto - 1
- 0
Expose built-in parsers for use in custom parsers
#100 opened by jdidion - 0
Drop support for python 3.7
#97 opened by jdidion - 0
- 1
- 0
- 1
Make ProgressLogger a context manager
#68 opened by msto