gamcil

Postdoc @ Steinegger Lab, Seoul National University Ex. Chooi Lab, The University of Western Australia

Perth, Western Australia

Pinned Repositories

5_UTR_analysis
Language:Jupyter Notebook1 2 02
AAFTF
Automatic Assembly For The Fungi
Language:Python0 1 00
academic-kickstart
Language:JavaScript0 0 00
cblaster
Find clustered hits from a BLAST search
Language:HTML106 4 6423
clinker
Gene cluster comparison figure generator
Language:Python545 15 9271
clustermap.js
Language:JavaScript30 2 75
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being at least 20,000 times faster.
Language:C2 1 00
fungiphy
Fungal marker-based phylogenetics toolkit
Language:Python1 2 00
genome2json
Parse GenBank/GFF3 to JSON
Language:Python3 2 30
synthaser
Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
Language:Python21 3 33

gamcil's Repositories

gamcil/clinker
Gene cluster comparison figure generator
Language:Python545 15 9271
gamcil/cblaster
Find clustered hits from a BLAST search
Language:HTML106 4 6423
gamcil/clustermap.js
Language:JavaScript30 2 75
gamcil/synthaser
Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
Language:Python21 3 33
gamcil/genome2json
Parse GenBank/GFF3 to JSON
Language:Python3 2 30
gamcil/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being at least 20,000 times faster.
Language:C2 1 00
gamcil/5_UTR_analysis
Language:Jupyter Notebook1 2 02
gamcil/fungiphy
Fungal marker-based phylogenetics toolkit
Language:Python1 2 00
gamcil/AAFTF
Automatic Assembly For The Fungi
Language:Python0 1 00
gamcil/academic-kickstart
Language:JavaScript0 0 00
gamcil/AfterPhylo
Perl script for manipulating trees after phylogenetic reconstruction
Language:Perl0 1 00
gamcil/annotation_scripts
Miscellaneous scripts for genome annotation
Language:Python0 1 00
gamcil/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
gamcil/browser-api-demo
A simple demo to show usage of the Mozilla Browser API. See https://developer.mozilla.org/en-US/docs/Web/API/Using_the_Browser_API for more details.
Language:JavaScript1 0
gamcil/C_victoriae_gene_density
Language:Jupyter Notebook2 0
gamcil/cblaster_benchmarks
Scripts used in benchmarking MultiGeneBlast and cblaster
Language:Shell2 0
gamcil/d3-legend
A reusable d3 legend component.
Language:JavaScript1 0
gamcil/flask
The Python micro framework for building web applications.
Language:Python1 0
gamcil/frippa
Fungal Ribosimally synthesized and Post-translationally modified Peptide (RiPP) assayer
Language:Python2 0
gamcil/funannotate
Eukaryotic Genome Annotation Pipeline
Language:Python1 01
gamcil/gamcil
1 0
gamcil/htslib
C library for high-throughput sequencing data formats
Language:C0 0
gamcil/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Language:C0 0
gamcil/MMseqs2-App
MMseqs2 app to run on your workstation or servers
Language:Vue0 0
gamcil/phylotree.js
Interactive viewer of phylogenetic trees
Language:JavaScript1 0
gamcil/Prosa
Probabilistic approach to Protein Structure Alignment and Vectorized Forward-Backward algorithm
Language:Jupyter Notebook
gamcil/react-flask
Starter repo for getting up-and-running with React, Flask, webpack, and Babel.
Language:JavaScript1 0
gamcil/synthaser.js
Re-usable D3 chart used in synthaser visualisation
Language:JavaScript
gamcil/synthaser_scripts
Python scripts used in synthaser manuscript
Language:HTML2 0
gamcil/tmalign-wasm
Language:C++0 0