gamcil
Postdoc @ Steinegger Lab, Seoul National University Ex. Chooi Lab, The University of Western Australia
Perth, Western Australia
Pinned Repositories
5_UTR_analysis
AAFTF
Automatic Assembly For The Fungi
academic-kickstart
cblaster
Find clustered hits from a BLAST search
clinker
Gene cluster comparison figure generator
clustermap.js
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being at least 20,000 times faster.
fungiphy
Fungal marker-based phylogenetics toolkit
genome2json
Parse GenBank/GFF3 to JSON
synthaser
Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
gamcil's Repositories
gamcil/clinker
Gene cluster comparison figure generator
gamcil/cblaster
Find clustered hits from a BLAST search
gamcil/clustermap.js
gamcil/synthaser
Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
gamcil/genome2json
Parse GenBank/GFF3 to JSON
gamcil/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being at least 20,000 times faster.
gamcil/5_UTR_analysis
gamcil/fungiphy
Fungal marker-based phylogenetics toolkit
gamcil/AAFTF
Automatic Assembly For The Fungi
gamcil/academic-kickstart
gamcil/AfterPhylo
Perl script for manipulating trees after phylogenetic reconstruction
gamcil/annotation_scripts
Miscellaneous scripts for genome annotation
gamcil/bioconda-recipes
Conda recipes for the bioconda channel.
gamcil/browser-api-demo
A simple demo to show usage of the Mozilla Browser API. See https://developer.mozilla.org/en-US/docs/Web/API/Using_the_Browser_API for more details.
gamcil/C_victoriae_gene_density
gamcil/cblaster_benchmarks
Scripts used in benchmarking MultiGeneBlast and cblaster
gamcil/d3-legend
A reusable d3 legend component.
gamcil/flask
The Python micro framework for building web applications.
gamcil/frippa
Fungal Ribosimally synthesized and Post-translationally modified Peptide (RiPP) assayer
gamcil/funannotate
Eukaryotic Genome Annotation Pipeline
gamcil/gamcil
gamcil/htslib
C library for high-throughput sequencing data formats
gamcil/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
gamcil/MMseqs2-App
MMseqs2 app to run on your workstation or servers
gamcil/phylotree.js
Interactive viewer of phylogenetic trees
gamcil/react-flask
Starter repo for getting up-and-running with React, Flask, webpack, and Babel.
gamcil/synthaser.js
Re-usable D3 chart used in synthaser visualisation
gamcil/synthaser_scripts
Python scripts used in synthaser manuscript
gamcil/tmalign-wasm