cblaster makedb: error: argument paths: Invalid path:
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JordanVV commented
Hi,
I tried to run cblaster, but got a error message when i tried to create my own database:
cblaster makedb: error: argument paths: Invalid path: 'mydb'
I have executed the command line either directly from the folder where the gbk files are, and also in the file containing a folder with the genome using the wildcard genomes/*.gbk
The problem comes from the 'mydb' argument and I tried many things to fix it, like writing the entire paths /users/.../cblaster/genomes oer just users/.../cblaster/
Thank you for your answer..
All the best
JordanVV commented
Solved.
Doing
cblaster makedb -n mydb genomes/*.gbk