error with enrico_sed
Opened this issue · 13 comments
Hello
I am using enrico first time and I am getting error like
base) ajay@ajay-HP-Compaq-8200-Elite-SFF-PC:~/myanalysis$ enrico_sed myanalysis.conf
Traceback (most recent call last):
File "/home/ajay/Downloads/enrico/bin/enrico_sed", line 9, in
from enrico.RunGTlike import run
File "/home/ajay/Downloads/enrico/enrico/RunGTlike.py", line 4, in
from enrico.gtfunction import Observation
File "/home/ajay/Downloads/enrico/enrico/gtfunction.py", line 15, in
from gt_apps import evtbin, maketime, diffResps, expCube, expMap, srcMaps, model_map, filter, obsSim
File "/home/ajay/anaconda3/envs/fermi2/lib/python3.7/site-packages/fermitools/gt_apps.py", line 13, in
addCubes = GtApp('gtltsum', 'Likelihood')
File "/home/ajay/anaconda3/envs/fermi2/lib/python3.7/site-packages/fermitools/GtApp.py", line 40, in init
preserveQuotes)
File "/home/ajay/anaconda3/envs/fermi2/lib/python3.7/site-packages/fermitools/GtApp.py", line 33, in getApp
pars = Pil(appName + '.par', raiseKeyErrors, preserveQuotes)
File "/home/ajay/anaconda3/envs/fermi2/lib/python3.7/site-packages/fermitools/pil.py", line 40, in init
self.parfile = os.path.join(pfilesPath(pfile), pfile)
File "/home/ajay/anaconda3/envs/fermi2/lib/python3.7/site-packages/fermitools/pfilesPath.py", line 37, in pfilesPath
raise ValueError(ParFileError + ": .par file " + parfile + " not found.")
ValueError: ParFileError: .par file gtltsum.par not found
How can i resolve this.
Regards
Ajay
Hello
does not seem to be a enrico-related error
did you try to run gtltsum on command line?
cheers
I tried but it shows command not found.
and other command such as gtlike?
Now i am getting this error
###################################
************************************************************
*** SUMMARY: FRONTBACK ***
************************************************************
Source = PG155+113
RA = 238.92935 degrees
Dec = 11.190102 degrees
Start = 239557417.0 MET (s)
Stop = 256970880.0 MET (s)
ROI = 10.0 degrees
E min = 100.0 MeV
E max = 300000.0 MeV
E min ext = 50.11872336272722 MeV
E max ext = 598578.6944906638 MeV
IRFs = P8R3_SOURCE_V3
evclass = 128
evtype = 3
************************************************************
*** 1 gtselect --- Select data from library, coarse cut
************************************************************
time -p gtselect infile=~/myanalysis/data.list outfile=/home/ajay/myanalysis/PG155+113_Test0fPG1553_EvtCoarse.fits ra=238.92935 dec=11.190102 rad=10.0 tmin=239557417.0 tmax=256970880.0 emin=0.0 emax=10000000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql"
Caught St13runtime_error at the top level: File not found: /myanalysis/data.list/myanalysis/data.list outfile=/home/ajay/myanalysis/PG155+113_Test0fPG1553_EvtCoarse.fits ra=238.92935 dec=11.190102 rad=10.0 tmin=239557417.0 tmax=256970880.0 emin=0.0 emax=10000000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql"
[Message] Warning: An error ocurred, retrying ...
time -p gtselect infile=
Caught St13runtime_error at the top level: File not found: /myanalysis/data.list/myanalysis/data.list outfile=/home/ajay/myanalysis/PG155+113_Test0fPG1553_EvtCoarse.fits ra=238.92935 dec=11.190102 rad=10.0 tmin=239557417.0 tmax=256970880.0 emin=0.0 emax=10000000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql"
[Message] Warning: An error ocurred, retrying ...
time -p gtselect infile=
Caught St13runtime_error at the top level: File not found: /myanalysis/data.list/myanalysis/data.list outfile=/home/ajay/myanalysis/PG155+113_Test0fPG1553_EvtCoarse.fits ra=238.92935 dec=11.190102 rad=10.0 tmin=239557417.0 tmax=256970880.0 emin=0.0 emax=10000000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql"
[Message] Warning: An error ocurred, retrying ...
time -p gtselect infile=
Caught St13runtime_error at the top level: File not found: /myanalysis/data.list/myanalysis/data.list outfile=/home/ajay/myanalysis/PG155+113_Test0fPG1553_EvtCoarse.fits ra=238.92935 dec=11.190102 rad=10.0 tmin=239557417.0 tmax=256970880.0 emin=0.0 emax=10000000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql"
[Message] Warning: An error ocurred, retrying ...
time -p gtselect infile=
Caught St13runtime_error at the top level: File not found: ~/myanalysis/data.list
[Message] Warning: An error ocurred, retrying ...
*** Error [Message]: An error ocurred and could not be recovered. Exiting! ***
##############################################
this file " ~/myanalysis/data.list" is not found. check your config file and change the path
Thanks let me try it
I am getting error while doing light_curve analysis
#################################
*** 11 Re-optimize ---
************************************************************
Fit output with NEWMINUIT: 8705.488283850456 [quality: 3]
[FitMaker]: Fit with gtlike performed
************************************************************
*** 12 PlotSED --- Generate SED plot
************************************************************
Traceback (most recent call last):
File "./bin/enrico_sed", line 48, in
liste = np.genfromtxt(sys.argv[1],dtype="str",unpack=True)
File "/home/ajay/anaconda3/envs/fermi2/lib/python3.7/site-packages/numpy/lib/npyio.py", line 2124, in genfromtxt
raise ValueError(errmsg)
ValueError: Some errors were detected !
Line #6 (got 1 columns instead of 3)
Line #15 (got 1 columns instead of 3)
Line #24 (got 1 columns instead of 3)
Line #31 (got 1 columns instead of 3)
Line #37 (got 1 columns instead of 3)
Line #43 (got 1 columns instead of 3)
Line #48 (got 1 columns instead of 3)
Line #59 (got 1 columns instead of 3)
Line #66 (got 1 columns instead of 3)
Line #71 (got 1 columns instead of 3)
Line #82 (got 1 columns instead of 3)
Line #90 (got 1 columns instead of 3)
Line #97 (got 1 columns instead of 3)
Line #108 (got 1 columns instead of 3)
Line #118 (got 1 columns instead of 3)
Line #123 (got 1 columns instead of 3)
Line #132 (got 1 columns instead of 3)
Line #138 (got 1 columns instead of 3)
Line #144 (got 1 columns instead of 3)
Line #148 (got 1 columns instead of 3)
Line #154 (got 1 columns instead of 3)
Line #158 (got 1 columns instead of 3)
Line #165 (got 1 columns instead of 3)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "./bin/enrico_sed", line 55, in
sed(config,infile)
File "./bin/enrico_sed", line 13, in sed
run(infile)
File "/home/ajay/Downloads/enrico/enrico/RunGTlike.py", line 212, in run
sedresult = FitRunner.ComputeSED(Fit,dump=False)
File "/home/ajay/Downloads/enrico/enrico/fitmaker.py", line 550, in ComputeSED
result._WriteCovMatrix(Param)
File "/home/ajay/Downloads/enrico/enrico/plotting.py", line 66, in _WriteCovMatrix
np.savetxt(par.PlotName+'.cov.dat', self.covar, header=header, fmt='%.3e', comments='', delimiter=',')
File "<array_function internals>", line 6, in savetxt
File "/home/ajay/anaconda3/envs/fermi2/lib/python3.7/site-packages/numpy/lib/npyio.py", line 1368, in savetxt
open(fname, 'wt').close()
FileNotFoundError: [Errno 2] No such file or directory: '/home/ajay/myanalysis/LightCurve_20bins//Spectrum/SED_PG155+113_PowerLaw.cov.dat'
**********************
hello Sir,
At the end of the sed analysis, I am getting some warning messages. Whether these warnings will cause any problem in further analysis like LC analysis, upper bound etc. Can you comment on that?
************************************************************
*** 12 PlotSED --- Generate SED plot
************************************************************
[Result]: Decorrelation energy : 2.82e+03 MeV
[Result]: Diffential flux at the Decorrelation energy : 4.61e-13 +/- 2.41e-17 ph/cm2/s/MeV
[Result]: SED value at the Decorrelation energy : 5.89e-12 +/- 3.08e-16 erg/cm2/s
WARNING:matplotlib.font_manager:findfont: Font family ['serif'] not found. Falling back to DejaVu Sans.
WARNING:matplotlib.font_manager:findfont: Font family ['serif'] not found. Falling back to DejaVu Sans.
/home/ajay/Downloads/enrico/enrico/plotting.py:230: MatplotlibDeprecationWarning: savefig() got unexpected keyword argument "papertype" which is no longer supported as of 3.3 and will become an error two minor releases later
frameon=None)
/home/ajay/Downloads/enrico/enrico/plotting.py:230: MatplotlibDeprecationWarning: savefig() got unexpected keyword argument "frameon" which is no longer supported as of 3.3 and will become an error two minor releases later
frameon=None)
<class 'NameError'>
("name 'par' is not defined",)
name 'par' is not defined
************************************************************
*** 13 Results --- Print results of the fit
************************************************************
(4FGL J1531.6+0406
Spectrum: PowerLaw
0 Prefactor: 5.862e-01 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-13) fixed
1 Index: -2.287e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
2 Scale: 1.662e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1539.1+1008
Spectrum: PowerLaw
3 Prefactor: 1.394e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-13) fixed
4 Index: -2.425e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
5 Scale: 1.233e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1541.7+1413
Spectrum: PowerLaw
6 Prefactor: 9.202e-01 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-14) fixed
7 Index: -1.918e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
8 Scale: 4.847e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1543.3+1026
Spectrum: PowerLaw
9 Prefactor: 3.181e-01 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-12) fixed
10 Index: -2.581e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
11 Scale: 8.943e+02 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1543.6+0452
Spectrum: PowerLaw
12 Prefactor: 3.452e-01 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-13) fixed
13 Index: -1.911e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
14 Scale: 3.654e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1546.0+0819
Spectrum: LogParabola
15 norm: 1.185e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-13) fixed
16 alpha: 1.738e+00 0.000e+00 5.000e-01 3.000e+00 ( 1.000e+00) fixed
17 beta: 1.039e-01 0.000e+00 0.000e+00 1.000e+00 ( 1.000e+00) fixed
18 Eb: 2.327e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1547.9+0445
Spectrum: PowerLaw
19 Prefactor: 2.101e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-14) fixed
20 Index: -2.230e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
21 Scale: 2.815e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1548.3+1456
Spectrum: LogParabola
22 norm: 8.066e-01 2.446e-01 0.000e+00 1.000e+04 ( 1.000e-12)
23 alpha: 1.486e+00 3.403e-01 5.000e-01 3.000e+00 ( 1.000e+00)
24 beta: 2.956e-01 1.692e-01 0.000e+00 1.000e+00 ( 1.000e+00)
25 Eb: 1.179e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1550.7+0528
Spectrum: LogParabola
26 norm: 1.183e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-12) fixed
27 alpha: 2.287e+00 0.000e+00 5.000e-01 3.000e+00 ( 1.000e+00) fixed
28 beta: 1.387e-01 0.000e+00 0.000e+00 1.000e+00 ( 1.000e+00) fixed
29 Eb: 9.512e+02 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1552.0+0850
Spectrum: LogParabola
30 norm: 1.079e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-13) fixed
31 alpha: 1.940e+00 0.000e+00 5.000e-01 3.000e+00 ( 1.000e+00) fixed
32 beta: 1.098e-01 0.000e+00 0.000e+00 1.000e+00 ( 1.000e+00) fixed
33 Eb: 1.886e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1553.6+1257
Spectrum: LogParabola
34 norm: 2.410e+00 1.342e-01 0.000e+00 1.000e+04 ( 1.000e-11)
35 alpha: 2.155e+00 4.747e-02 5.000e-01 3.000e+00 ( 1.000e+00)
36 beta: 1.353e-01 3.352e-02 0.000e+00 1.000e+00 ( 1.000e+00)
37 Eb: 7.284e+02 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1556.5+1116
Spectrum: LogParabola
38 norm: 1.297e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-11) fixed
39 alpha: 2.094e+00 0.000e+00 5.000e-01 3.000e+00 ( 1.000e+00) fixed
40 beta: 7.144e-01 0.000e+00 0.000e+00 1.000e+00 ( 1.000e+00) fixed
41 Eb: 3.058e+02 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1600.4+0407
Spectrum: PowerLaw
42 Prefactor: 2.245e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-14) fixed
43 Index: -2.106e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
44 Scale: 2.672e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1603.8+1104
Spectrum: PowerLaw
45 Prefactor: 1.643e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-14) fixed
46 Index: -2.117e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
47 Scale: 3.350e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1606.2+1346
Spectrum: PowerLaw
48 Prefactor: 1.987e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-15) fixed
49 Index: -1.758e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
50 Scale: 9.069e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1607.0+1550
Spectrum: LogParabola
51 norm: 5.769e-01 6.472e-02 0.000e+00 1.000e+04 ( 1.000e-11)
52 alpha: 2.146e+00 0.000e+00 5.000e-01 3.000e+00 ( 1.000e+00) fixed
53 beta: 1.080e-01 0.000e+00 0.000e+00 1.000e+00 ( 1.000e+00) fixed
54 Eb: 7.332e+02 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1608.7+1029
Spectrum: LogParabola
55 norm: 7.583e-01 1.681e-01 0.000e+00 1.000e+04 ( 1.000e-11)
56 alpha: 2.785e+00 1.983e-01 5.000e-01 3.000e+00 ( 1.000e+00)
57 beta: 1.537e-01 1.723e-01 0.000e+00 1.000e+00 ( 1.000e+00)
58 Eb: 5.413e+02 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
4FGL J1612.1+1407
Spectrum: LogParabola
59 norm: 1.932e+00 0.000e+00 0.000e+00 1.000e+04 ( 1.000e-13) fixed
60 alpha: 1.666e+00 0.000e+00 5.000e-01 3.000e+00 ( 1.000e+00) fixed
61 beta: 6.455e-01 0.000e+00 0.000e+00 1.000e+00 ( 1.000e+00) fixed
62 Eb: 1.674e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
GalDiffModel
Spectrum: ConstantValue
63 Value: 1.061e+00 4.820e-02 1.000e-02 1.000e+01 ( 1.000e+00)
IsoDiffModel
Spectrum: FileFunction
64 Normalization: 1.219e+00 1.105e-01 1.000e-03 1.000e+03 ( 1.000e+00)
PG155+113
Spectrum: EblAtten::PowerLaw2
65 Integral: 1.000e+04 1.678e-01 0.000e+00 1.000e+04 ( 1.000e-12)
66 Index: -1.127e+00 2.542e-02 -5.000e+00 -5.000e-01 ( 1.000e+00)
67 LowerLimit: 1.000e+02 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
68 UpperLimit: 3.000e+05 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
69 tau_norm: 1.000e+00 0.000e+00 0.000e+00 2.500e+00 ( 1.000e+00) fixed
70 redshift: 4.900e-01 0.000e+00 0.000e+00 5.000e+00 ( 1.000e+00) fixed
71 ebl_model: 4.000e+00 0.000e+00 0.000e+00 2.000e+01 ( 1.000e+00) fixed
, '\n')
[FitMaker]: Results for the Fit
Source Name Npred TS
Values and (MINOS) errors for PG155+113
TS : 2165.52528596943
Integral : 10000.00 +/- 0.17 [ -24.64, + 0.00 ] 1e-12
Index : -1.13 +/- 0.03 [ -0.02, + 0.03 ] 1e+00
LowerLimit : 100.00 1e+00
UpperLimit : 300000.00 1e+00
tau_norm : 1.00 1e+00
redshift : 0.49 1e+00
ebl_model : 4.00 1e+00
('The covariance matrix is :\n', array([[2.81637566e-02, 9.08474938e-07],
[9.08474938e-07, 6.46158752e-04]]))
Source Flux [1.00e+02 MeV, 3.00e+05 MeV] :
4FGL J1531.6+0406 Integral Flux : 2.82e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1539.1+1008 Integral Flux : 4.33e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1541.7+1413 Integral Flux : 1.71e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1543.3+1026 Integral Flux : 5.75e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1543.6+0452 Integral Flux : 3.67e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1546.0+0819 Integral Flux : 2.40e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1547.9+0445 Integral Flux : 2.92e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1548.3+1456 Integral Flux : 3.40e-09 +/- 1.75e-09 ph/cm2/s
4FGL J1550.7+0528 Integral Flux : 1.11e-08 +/- 0.00e+00 ph/cm2/s
4FGL J1552.0+0850 Integral Flux : 2.15e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1553.6+1257 Integral Flux : 1.17e-07 +/- 8.42e-09 ph/cm2/s
4FGL J1556.5+1116 Integral Flux : 8.38e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1600.4+0407 Integral Flux : 2.05e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1603.8+1104 Integral Flux : 2.49e-09 +/- 0.00e+00 ph/cm2/s
4FGL J1606.2+1346 Integral Flux : 7.22e-10 +/- 0.00e+00 ph/cm2/s
4FGL J1607.0+1550 Integral Flux : 2.95e-08 +/- 3.31e-09 ph/cm2/s
4FGL J1608.7+1029 Integral Flux : 3.71e-08 +/- 8.19e-09 ph/cm2/s
4FGL J1612.1+1407 Integral Flux : 8.43e-10 +/- 0.00e+00 ph/cm2/s
GalDiffModel Integral Flux : 5.53e-04 +/- 2.51e-05 ph/cm2/s
IsoDiffModel Integral Flux : 1.50e-04 +/- 1.36e-05 ph/cm2/s
PG155+113 Integral Flux : 9.55e-09 +/- 4.70e-11 ph/cm2/s
time -p gtmodel srcmaps=/home/ajay/myanalysis/PG155+113_TestOfPG1553_FRONTBACK_PowerLaw2_srcMap.fits srcmdl=/home/ajay/myanalysis/PG155+113_PowerLaw2_TestOfPG1553_out.xml outfile=/home/ajay/myanalysis/PG155+113_TestOfPG1553_FRONTBACK_PowerLaw2_ModelMap.fits irfs="P8R3_SOURCE_V3" evtype="INDEF" expcube=/home/ajay/myanalysis/PG155+113_TestOfPG1553_FRONTBACK_ltCube.fits bexpmap=/home/ajay/myanalysis/PG155+113_TestOfPG1553_FRONTBACK_BinnedMap.fits convol=yes resample=yes rfactor=2 outtype="CMAP" psfcorr=yes phased_expmap=none edisp_bins=0 chatter=2 clobber=yes debug=no gui=no mode="ql"
real 25.48
user 21.26
sys 0.56
PrepareEbin /home/ajay/myanalysis/Spectrum/SED_PG155+113_PowerLaw2
WARNING:matplotlib.font_manager:findfont: Font family ['serif'] not found. Falling back to DejaVu Sans.
/home/ajay/Downloads/enrico/enrico/plotting.py:603: MatplotlibDeprecationWarning: savefig() got unexpected keyword argument "papertype" which is no longer supported as of 3.3 and will become an error two minor releases later
frameon=None)
/home/ajay/Downloads/enrico/enrico/plotting.py:603: MatplotlibDeprecationWarning: savefig() got unexpected keyword argument "bbox_inch" which is no longer supported as of 3.3 and will become an error two minor releases later
frameon=None)
/home/ajay/Downloads/enrico/enrico/plotting.py:603: MatplotlibDeprecationWarning: savefig() got unexpected keyword argument "frameon" which is no longer supported as of 3.3 and will become an error two minor releases later
frameon=None)
The warning should not be a problem
Hi,
After the running the command " enrico_sed_plot myanalysis.conf " . When i try to plot SED , i get these warnings and unable to generate plot. To eliminate the warnings , i removed matplotlib cache files, but getting same errors and warnings.
(fermi2.0.8) ajay@ajay:~/enrico$ rm -r /.cache/matplotlib//enrico$ enrico_plot_sed myanalysis.conf
(fermi2.0.8) ajay@ajay:
Matplotlib is building the font cache; this may take a moment.
PrepareEbin /home/ajay/enrico/myanalysis/Spectrum/SED_S50716+714_PowerLaw2
WARNING:matplotlib.font_manager:findfont: Font family ['serif'] not found. Falling back to DejaVu Sans.
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WARNING:matplotlib.font_manager:findfont: Font family ['serif'] not found. Falling back to DejaVu Sans.
WARNING:matplotlib.font_manager:findfont: Generic family 'serif' not found because none of the following families were found: Computer Modern
WARNING:matplotlib.font_manager:findfont: Font family ['serif'] not found. Falling back to DejaVu Sans.
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the plot should be produced if all the options are well set
Hello @davidsanchez
I have a query. I am analyzing a source, for that I am doing unbinnned likelihood and using NEWMINUIT optimizer. But the program suddenly killed when running "gtlike". I couldn't understand why this is happening. But when I tried it with the binned likelihood, it ran smoothly without any error. Now I just want to know why I am having this problem?
I have attached .conf file here.
(fermi) soumoya@soumoya-HP-Compaq-8200-Elite-SFF-PC:~/Downloads/ajay/enrico/S50716+714$ enrico_sed myanalysis.conf
************************************************************
*** SUMMARY: FRONTBACK ***
************************************************************
Source = S50716+714
RA = 110.473 degrees
Dec = 71.3434 degrees
Start = 247506217.0 MET (s)
Stop = 334165417.0 MET (s)
ROI = 10.0 degrees
E min = 100.0 MeV
E max = 300000.0 MeV
E min ext = 100.0 MeV
E max ext = 300000.0 MeV
IRFs = P8R3_SOURCE_V3
evclass = 128
evtype = 3
************************************************************
*** 1 gtselect --- Select data from library, coarse cut
************************************************************
time -p gtselect infile=/home/soumoya/Downloads/ajay/S50716+714/data.list outfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_EvtCoarse.fits ra=110.473 dec=71.3434 rad=10.0 tmin=247506217.0 tmax=334165417.0 emin=0.0 emax=10000000.0 zmin=0.0 zmax=90.0 evclass=128 evtype="INDEF" convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql"
Done.
real 10.04
user 7.40
sys 0.64
************************************************************
*** 2 gtselect --- Select data from library, fine cut
************************************************************
time -p gtselect infile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_EvtCoarse.fits outfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_Evt.fits ra=0.0 dec=0.0 rad=180.0 tmin="INDEF" tmax="INDEF" emin=100.0 emax=300000.0 zmin=0.0 zmax=90.0 evclass=128 evtype=3 convtype=-1 phasemin=0.0 phasemax=1.0 evtable="EVENTS" chatter=2 clobber=yes debug=no gui=no mode="ql"
Done.
real 0.55
user 0.47
sys 0.08
************************************************************
*** 3 gtmktime --- Update the GTI and cut data based on ROI
************************************************************
time -p gtmktime scfile=/home/soumoya/Downloads/ajay/S50716+714/L220512172346FD19599860_SC00.fits sctable="SC_DATA" filter="(DATA_QUAL>0)&&(LAT_CONFIG==1)" roicut=no evfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_Evt.fits evtable="EVENTS" outfile="/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_MkTime.fits.tmp" apply_filter=yes overwrite=no header_obstimes=yes tstart=247506217.0 tstop=334165417.0 gtifile="default" chatter=2 clobber=yes debug=no gui=no mode="ql"
real 15.89
user 12.38
sys 0.55
************************************************************
*** 4 gtdiffrsp --- Compute Diffuse response
************************************************************
time -p gtdiffrsp evfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_MkTime.fits evtable="EVENTS" scfile=/home/soumoya/Downloads/ajay/S50716+714/L220512172346FD19599860_SC00.fits sctable="SC_DATA" srcmdl=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_PowerLaw2_model.xml irfs="P8R3_SOURCE_V3" evclsmin=0 evclass="INDEF" evtype="INDEF" convert=no chatter=2 clobber=yes debug=no gui=no mode="ql"
adding source GalDiffModel
adding source IsoDiffModel
Working on...
/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_MkTime.fits.....................!
real 10362.80
user 10353.08
sys 3.31
done
************************************************************
*** 5 gtbin --- Create count maps (square fully embed in the ROI circle)
************************************************************
time -p gtbin evfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_MkTime.fits scfile=/home/soumoya/Downloads/ajay/S50716+714/L220512172346FD19599860_SC00.fits outfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_CountMap.fits algorithm="CMAP" ebinalg="LOG" emin=100.0 emax=300000.0 enumbins=0 denergy=0.0 ebinfile=NONE tbinalg="LIN" tstart=0.0 tstop=0.0 dtime=0.0 tbinfile=NONE snratio=0.0 lcemin=0.0 lcemax=0.0 nxpix=141 nypix=141 binsz=0.1 coordsys="CEL" xref=110.473 yref=71.3434 axisrot=0.0 rafield="RA" decfield="DEC" proj="AIT" hpx_ordering_scheme="RING" hpx_order=3 hpx_ebin=yes hpx_region="" evtable="EVENTS" sctable="SC_DATA" efield="ENERGY" tfield="TIME" chatter=2 clobber=yes debug=no gui=no mode="ql"
This is gtbin version HEAD
real 1.86
user 1.50
sys 0.10
************************************************************
*** 6 gtltcube --- Make live time cube
************************************************************
time -p gtltcube evfile="/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_MkTime.fits" evtable="EVENTS" scfile=/home/soumoya/Downloads/ajay/S50716+714/L220512172346FD19599860_SC00.fits sctable="SC_DATA" outfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_ltCube.fits dcostheta=0.025 binsz=1.0 phibins=0 tmin=0.0 tmax=0.0 file_version="1" zmin=0.0 zmax=90.0 chatter=2 clobber=yes debug=no gui=no mode="ql"
Working on file /home/soumoya/Downloads/ajay/S50716+714/L220512172346FD19599860_SC00.fits
.....................!
real 3608.69
user 3603.65
sys 1.42
[FitMaker]: Compute the psf
time -p gtpsf expcube=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_ltCube.fits outfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_PowerLaw2_psf.fits outtable="PSF" irfs="P8R3_SOURCE_V3" evtype=3 ra=110.473 dec=71.3434 emin=100.0 emax=300000.0 nenergies=35 thetamax=5.0 ntheta=300 chatter=2 clobber=yes debug=no gui=no mode="ql"
Using evtype=3 (i.e., FRONT/BACK irfs)
real 1.80
user 1.87
sys 0.39
************************************************************
*** 7 gtexpmap --- Make an exposure map
************************************************************
time -p gtexpmap evfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_MkTime.fits evtable="EVENTS" scfile=/home/soumoya/Downloads/ajay/S50716+714/L220512172346FD19599860_SC00.fits sctable="SC_DATA" expcube=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_ltCube.fits outfile=/home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_ExpMap.fits irfs="P8R3_SOURCE_V3" evtype=3 srcrad=25.0 nlong=120 nlat=120 nenergies=35 submap=no nlongmin=0 nlongmax=0 nlatmin=0 nlatmax=0 chatter=2 clobber=yes debug=no gui=no mode="ql"
The exposure maps generated by this tool are meant
to be used for unbinned likelihood analysis only.
Do not use them for binned analyses.
Using evtype=3 (i.e., FRONT/BACK irfs)
Computing the ExposureMap using /home/soumoya/Downloads/ajay/enrico/S50716+714/S50716+714_TestofS50716+714_FRONTBACK_ltCube.fits
....................!
real 442.46
user 430.28
sys 12.53
[Message]: Creating Likelihood object for component.
[Message]: Adding component to the summed likelihood.
************************************************************
*** 8 gtlike --- Run likelihood analysis
************************************************************
Fit output with NEWMINUIT: 2271570.333113697 [quality: 3]
Killed
(fermi) soumoya@soumoya-HP-Compaq-8200-Elite-SFF-PC:~/Downloads/ajay/enrico/S50716+714$
Hi,
It is not producing .srcmap.fits file while running enrico_sed.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
************************************************************
*** 10 Re-optimize ---
************************************************************
Fit output with NEWMINUIT: 85930.82926996409 [quality: 3]
[FitMaker]: Fit with gtlike performed
************************************************************
*** 11 PlotSED --- Generate SED plot
************************************************************
[Result]: Decorrelation energy : 6.41e+02 MeV
[Result]: Diffential flux at the Decorrelation energy : 3.75e-11 +/- 1.22e-12 ph/cm2/s/MeV
[Result]: SED value at the Decorrelation energy : 2.47e-11 +/- 8.04e-13 erg/cm2/s
WARNING:matplotlib.font_manager:findfont: Font family ['serif'] not found. Falling back to DejaVu Sans.
WARNING:matplotlib.font_manager:findfont: Generic family 'serif' not found because none of the following families were found: Computer Modern
WARNING:matplotlib.font_manager:findfont: Font family ['serif'] not found. Falling back to DejaVu Sans.
WARNING:matplotlib.font_manager:findfont: Generic family 'serif' not found because none of the following families were found: Computer Modern
<class 'NameError'>
("name 'par' is not defined",)
name 'par' is not defined
************************************************************
*** 12 Results --- Print results of the fit
************************************************************
(4FGL J0636.7+7139
Spectrum: PowerLaw
0 Prefactor: 2.227e+00 5.061e-01 0.000e+00 1.000e+04 ( 1.000e-12)
1 Index: -2.310e+00 0.000e+00 -6.000e+00 -5.000e-01 ( 1.000e+00) fixed
2 Scale: 1.274e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
GalDiffModel
Spectrum: ConstantValue
3 Value: 5.498e-01 1.048e-01 1.000e-02 1.000e+01 ( 1.000e+00)
IsoDiffModel
Spectrum: FileFunction
4 Normalization: 1.877e+00 1.626e-01 1.000e-03 1.000e+03 ( 1.000e+00)
S50716+714
Spectrum: EblAtten::LogParabola
5 norm: 6.776e-01 2.524e-02 0.000e+00 1.000e+04 ( 1.000e-11)
6 alpha: 2.051e+00 2.671e-02 5.000e-01 3.000e+00 ( 1.000e+00)
7 beta: 6.277e-02 1.595e-02 0.000e+00 1.000e+00 ( 1.000e+00)
8 Eb: 1.511e+03 0.000e+00 3.000e+01 3.000e+05 ( 1.000e+00) fixed
9 tau_norm: 1.000e+00 0.000e+00 0.000e+00 2.500e+00 ( 1.000e+00) fixed
10 redshift: 3.000e-01 0.000e+00 0.000e+00 5.000e+00 ( 1.000e+00) fixed
11 ebl_model: 4.000e+00 0.000e+00 0.000e+00 2.000e+01 ( 1.000e+00) fixed
, '\n')
[FitMaker]: Results for the Fit
Source Name Npred TS
Values and (MINOS) errors for S50716+714
TS : 4348.288437577983
norm : 0.68 +/- 0.03 [ -0.02, + 0.03 ] 1e-11
alpha : 2.05 +/- 0.03 [ -0.03, + 0.03 ] 1e+00
beta : 0.06 +/- 0.02 [ -0.02, + 0.02 ] 1e+00
Eb : 1510.63 1e+00
tau_norm : 1.00 1e+00
redshift : 0.30 1e+00
ebl_model : 4.00 1e+00
('The covariance matrix is :\n', array([[ 6.36870640e-04, -1.80474816e-04, 2.10700349e-04],
[-1.80474816e-04, 7.13246568e-04, 5.98677890e-05],
[ 2.10700349e-04, 5.98677890e-05, 2.54412767e-04]]))
Source Flux [1.00e+02 MeV, 3.00e+05 MeV] :
4FGL J0636.7+7139 Integral Flux : 6.08e-08 +/- 1.38e-08 ph/cm2/s
GalDiffModel Integral Flux : 2.86e-04 +/- 5.46e-05 ph/cm2/s
IsoDiffModel Integral Flux : 2.31e-04 +/- 2.00e-05 ph/cm2/s
S50716+714 Integral Flux : 1.33e-07 +/- 7.14e-09 ph/cm2/s
time -p gtmodel srcmaps=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits srcmdl=/home/ajay/enrico/S5_test1/S50716+714_LogParabola_TestofS5_out.xml outfile=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_ModelMap.fits irfs="P8R3_SOURCE_V3" evtype="INDEF" expcube=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_ltCube.fits bexpmap=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_BinnedMap.fits convol=yes resample=yes rfactor=2 outtype="CMAP" psfcorr=yes phased_expmap=none edisp_bins=0 chatter=2 clobber=yes debug=no gui=no mode="ql"
Parameter srcmaps: file "/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits" is not accessible in mode r.
Caught N5hoops12ApeExceptionE at the top level: Exception while querying for file name parameter srcmaps for component gtmodel; Ape exception code 43 (at /usr/share/miniconda/conda-bld/fermitools_1611158415999/work/hoops/build/debianstretch/sid-x86_64-64bit-gcc75-Optimized/src/hoops_ape.cxx: 565)
[Message] Warning: An error ocurred, retrying ...
time -p gtmodel srcmaps=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits srcmdl=/home/ajay/enrico/S5_test1/S50716+714_LogParabola_TestofS5_out.xml outfile=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_ModelMap.fits irfs="P8R3_SOURCE_V3" evtype="INDEF" expcube=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_ltCube.fits bexpmap=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_BinnedMap.fits convol=yes resample=yes rfactor=2 outtype="CMAP" psfcorr=yes phased_expmap=none edisp_bins=0 chatter=2 clobber=yes debug=no gui=no mode="ql"
Parameter srcmaps: file "/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits" is not accessible in mode r.
Caught N5hoops12ApeExceptionE at the top level: Exception while querying for file name parameter srcmaps for component gtmodel; Ape exception code 43 (at /usr/share/miniconda/conda-bld/fermitools_1611158415999/work/hoops/build/debianstretch/sid-x86_64-64bit-gcc75-Optimized/src/hoops_ape.cxx: 565)
[Message] Warning: An error ocurred, retrying ...
time -p gtmodel srcmaps=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits srcmdl=/home/ajay/enrico/S5_test1/S50716+714_LogParabola_TestofS5_out.xml outfile=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_ModelMap.fits irfs="P8R3_SOURCE_V3" evtype="INDEF" expcube=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_ltCube.fits bexpmap=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_BinnedMap.fits convol=yes resample=yes rfactor=2 outtype="CMAP" psfcorr=yes phased_expmap=none edisp_bins=0 chatter=2 clobber=yes debug=no gui=no mode="ql"
Parameter srcmaps: file "/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits" is not accessible in mode r.
Caught N5hoops12ApeExceptionE at the top level: Exception while querying for file name parameter srcmaps for component gtmodel; Ape exception code 43 (at /usr/share/miniconda/conda-bld/fermitools_1611158415999/work/hoops/build/debianstretch/sid-x86_64-64bit-gcc75-Optimized/src/hoops_ape.cxx: 565)
[Message] Warning: An error ocurred, retrying ...
time -p gtmodel srcmaps=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits srcmdl=/home/ajay/enrico/S5_test1/S50716+714_LogParabola_TestofS5_out.xml outfile=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_ModelMap.fits irfs="P8R3_SOURCE_V3" evtype="INDEF" expcube=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_ltCube.fits bexpmap=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_BinnedMap.fits convol=yes resample=yes rfactor=2 outtype="CMAP" psfcorr=yes phased_expmap=none edisp_bins=0 chatter=2 clobber=yes debug=no gui=no mode="ql"
Parameter srcmaps: file "/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits" is not accessible in mode r.
Caught N5hoops12ApeExceptionE at the top level: Exception while querying for file name parameter srcmaps for component gtmodel; Ape exception code 43 (at /usr/share/miniconda/conda-bld/fermitools_1611158415999/work/hoops/build/debianstretch/sid-x86_64-64bit-gcc75-Optimized/src/hoops_ape.cxx: 565)
[Message] Warning: An error ocurred, retrying ...
time -p gtmodel srcmaps=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits srcmdl=/home/ajay/enrico/S5_test1/S50716+714_LogParabola_TestofS5_out.xml outfile=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_ModelMap.fits irfs="P8R3_SOURCE_V3" evtype="INDEF" expcube=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_ltCube.fits bexpmap=/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_BinnedMap.fits convol=yes resample=yes rfactor=2 outtype="CMAP" psfcorr=yes phased_expmap=none edisp_bins=0 chatter=2 clobber=yes debug=no gui=no mode="ql"
Parameter srcmaps: file "/home/ajay/enrico/S5_test1/S50716+714_TestofS5_FRONTBACK_LogParabola_srcMap.fits" is not accessible in mode r.
Caught N5hoops12ApeExceptionE at the top level: Exception while querying for file name parameter srcmaps for component gtmodel; Ape exception code 43 (at /usr/share/miniconda/conda-bld/fermitools_1611158415999/work/hoops/build/debianstretch/sid-x86_64-64bit-gcc75-Optimized/src/hoops_ape.cxx: 565)
[Message] Warning: An error ocurred, retrying ...
*** Error [Message]: An error ocurred and could not be recovered. Exiting! ***
(fermi2.0.8) ajay@ajay:~/enrico/S5_test1$
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Any help is much appreciated. Thanks