MPRAnalyze is an analysis framework designed for data generated by Massively Parallel Reporter Assays (MPRAs). MPRAnlayze can be used for quantification of enhancer-induced transcription rates, calssification of active\inactive enhancers, and comparative analyses of enhancer activity between conditions.
MPRAnalyze is released via bioconductor, and could be installed using the BiocManager package:
BiocManager::install("MPRAnalyze")The newest version of MPRAnalyze can be installed directly from github:
library(devtools)
install_github("YosefLab/MPRAnalyze")