Pinned Repositories
arnav
Mutation calling using a site-specific binomial model
bam-parser-tutorial
A simple example of parsing BAM files using htslib
castools
Command line tool for the CAS project
common_scripts_GBlab
DEPRECATED
fdr
Control the false discovery rate using the Benjamini Hochberg procedure in C++
gzip_reader
An example for reading gzipped files in C++
maury
An R package to detect sample-swaps in Next Generation Sequencing(NGS) data.
mpileup2readcounts
Get per-nucleotide readcounts from samtools mpileup
regtools
Tools that integrate DNA-seq and RNA-seq data to help identify mutations that have a regulatory effect.
gatoravi's Repositories
gatoravi/gzip_reader
An example for reading gzipped files in C++
gatoravi/mpileup2readcounts
Get per-nucleotide readcounts from samtools mpileup
gatoravi/maury
An R package to detect sample-swaps in Next Generation Sequencing(NGS) data.
gatoravi/arnav
Mutation calling using a site-specific binomial model
gatoravi/fdr
Control the false discovery rate using the Benjamini Hochberg procedure in C++
gatoravi/fisher-exact
The fisher exact test from htslib
gatoravi/GenomicsSpring2017
gatoravi/hedgehog-variability
Notebooks and code used for the hedgehog variability project
gatoravi/MultilevelModeling
My course material from the class
gatoravi/castools
Command line tool for the CAS project
gatoravi/regtools
Tools that integrate DNA-seq and RNA-seq data to help identify mutations that have a regulatory effect.
gatoravi/avi-phd-thesis
My PhD dissertation at Washington University in St. Louis
gatoravi/csg-project
Comp stat gen project
gatoravi/fusion-report
Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
gatoravi/genomics
genomics assignments
gatoravi/GenVisR
Genome data visualizations
gatoravi/HumanLinkageAnalysis
Course related material from the human linkage class
gatoravi/machine-learning-cheat-sheet
Classical equations and diagrams in machine learning
gatoravi/MPRAnalyze
Analyse enhancer strength based on MPRA experiments.
gatoravi/nowarranty
oneoff scripts and random bits
gatoravi/python_chennai_jul2016
Teaching materials for my Python course
gatoravi/python_koans
Python Koans - Learn Python through TDD
gatoravi/recipes
Food :D
gatoravi/scMPRA
gatoravi/SEforDS
Code for the book "Software Engineering for Data Scientists"
gatoravi/thesis
gatoravi/TN_elections_2016
Docs related to the Tamil Nadu 2016 elections
gatoravi/unix_setup
unix setup files.
gatoravi/wustl-latex-dissertation-template
LaTeX disseration and thesis template for The Graduate School at Washington University in St. Louis.
gatoravi/zero-to-mastery-ml
All course materials for the Zero to Mastery Machine Learning and Data Science course.