Pinned Repositories
arnav
Mutation calling using a site-specific binomial model
bam-parser-tutorial
A simple example of parsing BAM files using htslib
castools
Command line tool for the CAS project
common_scripts_GBlab
DEPRECATED
denovogear-legacy
Statistical model to detect de-novo mutations using sequencing data from trios and pairs.
fdr
Control the false discovery rate using the Benjamini Hochberg procedure in C++
gzip_reader
An example for reading gzipped files in C++
maury
An R package to detect sample-swaps in Next Generation Sequencing(NGS) data.
mpileup2readcounts
Get per-nucleotide readcounts from samtools mpileup
gatoravi's Repositories
gatoravi/mpileup2readcounts
Get per-nucleotide readcounts from samtools mpileup
gatoravi/maury
An R package to detect sample-swaps in Next Generation Sequencing(NGS) data.
gatoravi/arnav
Mutation calling using a site-specific binomial model
gatoravi/fdr
Control the false discovery rate using the Benjamini Hochberg procedure in C++
gatoravi/fisher-exact
The fisher exact test from htslib
gatoravi/GenomicsSpring2017
gatoravi/hedgehog-variability
Notebooks and code used for the hedgehog variability project
gatoravi/MultilevelModeling
My course material from the class
gatoravi/castools
Command line tool for the CAS project
gatoravi/avi-phd-thesis
My PhD dissertation at Washington University in St. Louis
gatoravi/csg-project
Comp stat gen project
gatoravi/genomics
genomics assignments
gatoravi/HumanLinkageAnalysis
Course related material from the human linkage class
gatoravi/java-web-dev-exercises
demos, exercise sets, and studios for java-web-development
gatoravi/java-web-dev-studio7
gatoravi/machine-learning-cheat-sheet
Classical equations and diagrams in machine learning
gatoravi/MPRAnalyze
Analyse enhancer strength based on MPRA experiments.
gatoravi/orbit-report
gatoravi/python_chennai_jul2016
Teaching materials for my Python course
gatoravi/python_koans
Python Koans - Learn Python through TDD
gatoravi/recipes
Food :D
gatoravi/regtools
Tools that integrate DNA-seq and RNA-seq data to help identify mutations that have a regulatory effect.
gatoravi/rnavelo
gatoravi/scMPRA
gatoravi/scstoch
gatoravi/spa-day-starter-code
gatoravi/test-import
gatoravi/treecall
Tree-based joint lineage inference and somatic mutation calling
gatoravi/unix_setup
unix setup files.
gatoravi/wustl-latex-dissertation-template
LaTeX disseration and thesis template for The Graduate School at Washington University in St. Louis.