This repository contains the notebooks to analyze the single-cell data from the hedgehog-variability project.
This notebook contains code use to analyze the initial single-cell RNA-seq experiment with samples from 0, 17 and 30 hours.
This notebook contains code used to analyze the single-cell RNA sequencing data from the Dox induced and uninduced cells at 0, 19 and 30 hours.
This notebook contains code that marks cells from the first experiment as fast and slow responders and finds differentially expressed genes between them
This notebook contains code to learn the features of the fast-responders and slow-responders and applies the model to predict which Dox induced and uninduced cells look like fast responders and slow responders.