gavinmdouglas's Stars
danny305/StabilityOracle
jbloomlab/phydms
phylogenetic analyses informed by deep mutational scanning data
MaselLab/Codon-Adaptation-Index-of-Species
This repository contains scripts, data, and methods of analysis used in Codon Adaptation Index of Species (CAIS) related projects.
LangilleLab/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
sgsutcliffe/Wastewater_Analysis_Pipeline
A bioinformatics pipeline for analysis of SARS-CoV-2 from wastewater samples
Russel88/DOC
Dissimilarity Overlap Curve analysis
AstrobioMike/GToTree
A user-friendly workflow for phylogenomics
ohsu-microbiome/kegg_http_tools
Query KEGG for pathways from KEGG Orthologs (KOs).
rmcelreath/statrethinking_winter2019
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019
jnmacdonald/differential-abundance-analysis
cduvallet/microbiomeHD
Cross-disease comparison of case-control gut microbiome studies
lczech/gappa
A toolkit for analyzing and visualizing phylogenetic (placement) data
pierrebarbera/epa-ng
Massively parallel phylogenetic placement of genetic sequences
donovan-h-parks/STAMP
Statistical Analysis of Metagenomic Profiles
Ecogenomics/CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
brendankelly/micropower
power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
lairdm/microbedb
MicrobeDB v2
RNAer/micronota
annotation pipeline for microbial genomes and metagenomes
torognes/vsearch
Versatile open-source tool for microbiome analysis