gefeiwang

gefeiwang's Stars

• szcf-weiya/ESL-CN

  The Elements of Statistical Learning (ESL)的中文翻译、代码实现及其习题解答。

  Language:Jupyter Notebook2.4k590

• emdann/milopy

  Python implementation of Milo for differential abundance testing on KNN graph

  Language:Jupyter Notebook597

• SydneyBioX/scPB

  Single cell perturbation benchmarking

  Language:R5

• gregbellan/Stabl

  Language:Jupyter Notebook4210

• bowang-lab/DeepVelo

  Language:Python396

• davidliwei/PS

  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights in single-cell perturbation datasets.

  41

• bunnech/cellot

  Learning Single-Cell Perturbation Responses using Neural Optimal Transport

  Language:Python10810

• yyLIU12138/INSTINCT

  Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation

  Language:Python2

• shap/shap

  A game theoretic approach to explain the output of any machine learning model.

  Language:Jupyter Notebook22.4k3.2k

• Durenlab/LINGER

  7113

• gao-lab/GLUE

  Graph-linked unified embedding for single-cell multi-omics data integration

  Language:Python36154

• jasonppy/VoiceCraft

  Zero-Shot Speech Editing and Text-to-Speech in the Wild

  Language:Jupyter Notebook7.4k725

• yiqunchen/GenePT

  Language:Jupyter Notebook16426

• PKU-YuanGroup/Open-Sora-Plan

  This project aim to reproduce Sora (Open AI T2V model), we wish the open source community contribute to this project.

  Language:Python11.2k999

• Janezjz/cellanova

  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration

  Language:HTML13

• aertslab/scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook17528

• swaruplabUCI/ArchRtoSignac

  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)

  Language:R3110

• kaneplusplus/icd-10-cm-embedding

  LLM Embeddings for ICD 10 Data

  Language:TeX312

• drieslab/spatial-datasets

  overview of spatial datasets

  Language:R6624

• sbci-brain/SBCI_Toolkit

  MATLAB scripts for visualisation and analysis of SBCI data

  Language:Forth64

• molecular-neuroimaging/Imaging_Transcriptomics

  A package, and script, to perform imaging transcriptomics on a neuroimaging scan.

  Language:Python153

• phbradley/conga

  Clonotype Neighbor Graph Analysis

  Language:Jupyter Notebook8018

• rmarkello/abagen

  A toolbox for working with Allen Human Brain Atlas microarray expression data

  Language:Python9041

• BMHLab/AHBAprocessing

  Language:C++428

• wanglab-broad/CAST

  CAST package

  Language:Python82

• netneurolab/markello_transcriptome

  Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)

  Language:TeX63

• theislab/ehrapy

  Electronic Health Record Analysis with Python.

  Language:Python13618

• MarioniLab/miloR

  R package implementation of Milo for testing for differential abundance in KNN graphs

  Language:R33222

• hamed1375/Exphormer

  Exphormer: Sparse Transformer for Graphs

  Language:Python15520

• Wayfear/BrainNetworkTransformer

  The open-source implementation of the NeurIPS 2022 paper Brain Network Transformer.

  Language:Python7113