geneontology/pathways2GO

Issues

• Molybdenum cofactor biosynthesis (R-HSA-947581)

  #267 opened a year ago
  0

• Biotin transport and metabolism (R-HSA-196780)

  #266 opened a year ago
  0

• Vitamins B6 activation to pyridoxal phosphate (R-HSA-964975)

  #265 opened a year ago
  0

• Not all drug reaction elements are deleted from model

  #264 opened a year ago
  26

• Vitamin B5 (pantothenate) metabolism (R-HSA-199220)

  #261 opened a year ago
  0

• YeastPathways - Intermediate small molecules shared between reactions

  #258 opened a year ago
  11

• Merge manually-curated YeastPathways2BP into conversion code

  #255 opened a year ago
  1

• YeastPathways models have imaginary DB ref

  #254 opened a year ago
  4

• Vitamin B2 (riboflavin) metabolism (R-HSA-196843)

  #253 opened 2 years ago
  6

• Work with Reactome to modify the Reactome2GO xref file.

  #252 opened 2 years ago
  1

• DUPLICATE: Vitamin B1 (thiamin) metabolism (R-HSA-196819)

  #248 opened a year ago
  0

• Vitamin B1 (thiamin) metabolism (R-HSA-196819)

  #247 opened 2 years ago
  0

• EGFR Downregulation (R-HSA-182971)

  #246 opened 2 years ago
  0

• Triglyceride catabolism (R-HSA-163560)

  #245 opened 2 years ago
  0

• Header on the "clone evidence" popup has a gomodel: that doesn't match the model title

  #244 opened a year ago
  3

• providedBy: URLs inconsistent between users from same group

  #243 opened 2 years ago
  3

• YeastPathways import: "source: null:*pathway-name" instead of "source: SGD:*pathway-name*"

  #242 opened 2 years ago
  4

• fix errors in fructose metabolism R-HSA-5652084

  #241 opened a year ago
  2

• Cleanup of an ChEBI non pH7.3 chemicals

  #240 opened 2 years ago
  0

• Analysis of missing ChEBI identifiers

  #239 opened 2 years ago
  0

• Add starting locations for transported molecules

  #238 opened 2 years ago
  1

• Orphan gene products are showing up in pathways

  #237 opened a year ago
  3

• Report for missing ChEBI IDs in release 83 work

  #236 opened 2 years ago
  9

• Reactome proteoforms that point to deleted UniProt entries

  #232 opened 2 years ago
  4

• Triglyceride biosynthesis (R-HSA-75109)

  #231 opened 2 years ago
  1

• Regulation of ChREBP (MLXIPL) ( R-HSA-163765, R-HSA-163680, R-HSA-163358, R-HSA-163767)

  #230 opened 2 years ago
  1

• Reaction intermediates: out of scope?

  #229 opened 2 years ago
  1

• Representation questions (more to add later; didn't want to lose the notes)

  #228 opened 2 years ago
  0

• Same entity?

  #227 opened 2 years ago
  0

• Deprecated or suboptimal UniProtKB accessions referenced in Reactome

  #226 opened 2 years ago
  7

• Regulation of glycolysis by fructose 2,6-bisphosphate metabolism (R-HSA-9634600)

  #225 opened 2 years ago
  0

• Something is weird about the import of Regulation of glycolysis by fructose 2,6-bisphosphate metabolism - imported from: Reactome

  #223 opened 2 years ago
  4

• Aspartate and asparagine metabolism (R-HSA-8963693)

  #222 opened 2 years ago
  0

• Convert chemicals to ChEBI rather than Reacto

  #221 opened 2 years ago
  7

• Reactome: EWASs with wrong modified residues

  #220 opened 2 years ago
  3

• Clean up EWASs with wrong modifiedResidue annotations

  #219 opened 2 years ago
  0

• PKA-mediated phosphorylation of key metabolic factors (R-HSA-163358)

  #218 opened 2 years ago
  0

• glucose metabolism patches

  #217 opened 9 months ago
  1

• Glucagon signaling in metabolic regulation ( R-HSA-163359) and PKA activation in glucagon signalling (R-HSA-164378)

  #216 opened 2 years ago
  0

• Reactome Release #85

  #215 opened a year ago
  26

• Generate stats for GO-CAM completeness used in manuscript

  #213 opened 2 years ago
  0

• Insulin effects increased synthesis of Xylulose-5-Phosphate (R-HSA-163754)

  #212 opened 2 years ago
  0

• Vitamin C (ascorbate) metabolism (R-HSA-196836)

  #211 opened 2 years ago
  0

• Pyruvate metabolism (R-HSA-70268)

  #209 opened 9 months ago
  1

• Citric acid cycle (TCA cycle) - imported from: Reactome (R-HSA-71403)

  #208 opened 9 months ago
  15

• Terminal pathway of complement (R-HSA-166665)

  #207 opened 2 years ago
  0

• Adrenaline,noradrenaline inhibits insulin secretion (R-HSA-400042)

  #205 opened 2 years ago
  1

• Change the representation of regulatory reactions to use 'has_small_molecule_regulator' activity

  #204 opened a year ago
  8

• There is a bug importing co-transporters and antiporters

  #203 opened 2 years ago
  3

• Remove (don't load) models that are a single node

  #202 opened 2 years ago
  12