gennadylaptev's Stars
rtqichen/torchdiffeq
Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.
matanhofree/crc-immune-hubs
Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"
saibalmars/GraphRicciCurvature
A python library to compute the graph Ricci curvature and Ricci flow on NetworkX graph.
mousepixels/sanbomics_scripts
scripts and notebooks from sanbomics
neurreps/awesome-neural-geometry
A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond
zsteve/gWOT
Global Waddington-OT
iamalexkorotin/NeuralOptimalTransport
PyTorch implementation of "Neural Optimal Transport" (ICLR 2023 Spotlight)
broadinstitute/wot
A software package for analyzing snapshots of developmental processes
mossjacob/pyslingshot
Python implementation of the Slingshot pseudotime algorithm
kstreet13/slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
theislab/paga
Mapping out the coarse-grained connectivity structures of complex manifolds.
NBISweden/excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
NBISweden/workshop-scRNAseq
Single cell RNA sequencing analysis course
zsteve/mfl
Trajectory Inference via Mean-field Langevin in Path Space
CBIIT/TULIP
Classifying RNA-seq samples into different tumor types.
tulikakakati/DEGnext
cole-trapnell-lab/monocle3
aet21/SCENT
Estimation of Single-Cell Potency with Single Cell Entropy
anthbapt/Cellular-differentiation-trajectories-with-Ricci-flow
Charting cellular differentiation trajectories with normalised discrete Ricci flow
agitter/single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
dynverse/dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇
dynverse/dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤
dynverse/dynguidelines
Selecting the optimal trajectory inference based on a given dataset and user input 🔮
zcang/scGeom
karpathy/nanoGPT
The simplest, fastest repository for training/finetuning medium-sized GPTs.
Teichlab/HCA_Heart_ver2
fedelopez77/sympa
Embedding graphs in symmetric spaces
Lifoof/MoGCN
Multi-omics integration method using AE and GCN
pyt-team/TopoModelX
Topological Deep Learning
mcavus/Kernighan-Lin
Implementation of Kernighan-Lin graph partitioning algorithm in Python