Pinned Repositories
cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
CIS
cohesive
cohesive-ngsmanager
MSTreesV2_POC
GrapeTree for large datasets
PairwiseDifferencesToROC
Script performing Receiver Operating Characteristic (ROC) analysis to identify thresholds of mutation pairwise differences from microbial genomes involved in an investigated outbreak
spread
Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.
TreeToCongruency
Script comparing two trees through a tanglegram and estimations of congruency metrics
vcf2mst
Hamming Distance based Minimum Spanning Tree from Samples vcf using graptree
wiki-engine
GENPAT (Italian National Reference Centre for WGS of microbial pathogens)'s Repositories
genpat-it/spread
Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.
genpat-it/cgmlst-dists
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
genpat-it/CIS
genpat-it/cohesive
genpat-it/cohesive-ngsmanager
genpat-it/MSTreesV2_POC
GrapeTree for large datasets
genpat-it/PairwiseDifferencesToROC
Script performing Receiver Operating Characteristic (ROC) analysis to identify thresholds of mutation pairwise differences from microbial genomes involved in an investigated outbreak
genpat-it/TreeToCongruency
Script comparing two trees through a tanglegram and estimations of congruency metrics
genpat-it/vcf2mst
Hamming Distance based Minimum Spanning Tree from Samples vcf using graptree
genpat-it/wiki-engine
genpat-it/cgmlst-dists-64
A fork of the cgmlst-dists program that has been modified to manage large files and uses 64-bit integers to calculate the size of distance vector.
genpat-it/cgmlst-dists-py
The python multithreaded version of the famous cgmlst-dists bioinformatic tool by Torsten Seemann
genpat-it/cohesive-images
genpat-it/cohesive-jenkins
genpat-it/genpat-dashboard
GenPat-Dashboard web application
genpat-it/grapetree-gis
Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.
genpat-it/mkdocs-packages
Collection of MkDocs packages we use to build our documentation
genpat-it/ngsmanager
Bioinformatic pipeline of the GENPAT platform