Pinned Repositories
cdiff_paper_analyses
cs109b-microbiome
MCSPACE
MCSPACE: A generative AI-based model for identifying, from sequencing data, spatially co-localized assemblages of microbes, and detecting changes in the proportions of these assemblages over time and due to introduced perturbations
mctimme2
mditre
MDSINE2
MDSINE2_Paper
mitre
The Microbiome Interpretable Temporal Rule Engine
mitre_paper_results
Input code and results from simulations supporting the MITRE paper.
RuleBasedDynamics
Rule based dynamical systems model for microbe time-series data
Gerber Lab's Repositories
gerberlab/mitre
The Microbiome Interpretable Temporal Rule Engine
gerberlab/MDSINE2
gerberlab/mditre
gerberlab/mctimme2
gerberlab/cdiff_paper_analyses
gerberlab/cs109b-microbiome
gerberlab/MCSPACE
MCSPACE: A generative AI-based model for identifying, from sequencing data, spatially co-localized assemblages of microbes, and detecting changes in the proportions of these assemblages over time and due to introduced perturbations
gerberlab/MDSINE2_Paper
gerberlab/mitre_paper_results
Input code and results from simulations supporting the MITRE paper.
gerberlab/RuleBasedDynamics
Rule based dynamical systems model for microbe time-series data
gerberlab/mmethane
gerberlab/mmethane-paper-results