Pinned Repositories
awesome
A curated list of awesome lists
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
AwesomePlotGenerator
bioconda-recipes
Conda recipes for the bioconda channel.
bioinformatics_scripts
Bioinformatics scripts
computer-science-and-engineering
:mortar_board: Path to a free self-taught graduation in Computer Science
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
datasciencecoursera
Repository with my R scripts for the Data Science Specialization on Coursera (Johns Hopkins)
Palomar
Palomar
Pore-C-Snakemake
Fork of Pore-C-Snakemake for running on the MPI cluster
gerikson's Repositories
gerikson/bioinformatics_scripts
Bioinformatics scripts
gerikson/awesome
A curated list of awesome lists
gerikson/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
gerikson/AwesomePlotGenerator
gerikson/bioconda-recipes
Conda recipes for the bioconda channel.
gerikson/computer-science-and-engineering
:mortar_board: Path to a free self-taught graduation in Computer Science
gerikson/courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
gerikson/datasciencecoursera
Repository with my R scripts for the Data Science Specialization on Coursera (Johns Hopkins)
gerikson/DataScienceSpCourseNotes
Compiled Notes for all 9 courses in the Coursera Data Science Specialization
gerikson/Pore-C-Snakemake
Fork of Pore-C-Snakemake for running on the MPI cluster
gerikson/datasharing
The Leek group guide to data sharing
gerikson/DeepMP
DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
gerikson/Find_repeatFree_region
gerikson/flair
Full-Length Alternative Isoform analysis of RNA
gerikson/GEOanalysis
gerikson/gerikson
gerikson/gerikson.github.io
gerikson/Misc
Misc. utilities
gerikson/myvariant.info
myvariant.info
gerikson/nanoporeReads_dataTransfer
A pipeline to transfer the Nanopore reads to end users
gerikson/notes
Lab notes and software usage guides
gerikson/oneliners
Useful bash one-liners for bioinformatics.
gerikson/pandasVCF
VCF parser using the Python pandas library
gerikson/primer_tool
This is a simple program that reads in a file with multiple sequences in fasta format and then finds the primers that are required to join these sequences together using a yeast assembly protocol. Dependency - primer3 (https://github.com/libnano/primer3-py)
gerikson/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
gerikson/PythonScripts
gerikson/SalkIGCTools
gerikson/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
gerikson/Wellderly-1
Genetics Research Project to Analyze the Genome of Advanced Aged Subjects
gerikson/Wellderly_analysis