gexijin/idepGolem

idep 1.1 will disconnect automatically if the data format is not acceptable

Closed this issue · 4 comments

JianYes commented

Describe the bug
For both data files list here, idep 1.1 will disconnect automatically because the data format is not acceptable.

To Reproduce
Steps to reproduce the behavior:

  1. Go to 'idep 1.1'
  2. Select species as it is: Human
  3. Upload data file
  4. See error

Expected behavior
Give a message like "The data format is not acceptable. Please refer to https://idepsite.wordpress.com/data-format/ for more information"

Screenshots
image

Additional context
Test_20230407.csv
Gene Expression Matrix.csv

malcook commented

I am experiencing this error as well analyzing zebrafish GSE56176 GEO data from DEE2_Zebrafish and would love to use idep if it worked for me.

edit: I now see that the _gene_level,csv is blank - this is perhaps a bug with iDEP-READS

EricTulowetzke commented

This evening I will take a look at this if I have time. @malcook or @JianYes can either of you link your data files that cause this error?

malcook commented

Thanks @EricTulowetzke , but I learned that the file I downloaded for GSE56176 GEO data from DEE2_Zebrafish was empty, so the error is perhaps with iDEP-READS, which I don't think should have created an empty file.

JianYes commented

@EricTulowetzke
you may find the two files with unacceptable format in "Additional context", on the bottom of the issue #549.
Thanks.