Pinned Repositories
iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
dotfiles
using gnu stow, gnu make to manage dotfiles
JASPAR-UCSC-tracks
Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
CytoML
A GatingML Interface for Cross Platform Cytometry Data Sharing
flowCore
Core flow cytometry infrastructure
wassermanlab.github.io
malcook's Repositories
malcook/dotfiles
using gnu stow, gnu make to manage dotfiles
malcook/JASPAR-UCSC-tracks
Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
malcook/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
malcook/cellBrowser
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
malcook/chordpro-mode
Emacs mode for editing chordpro files
malcook/csaw
Clone of the Bioconductor repository for the csaw package.
malcook/data.table
R's data.table package extends data.frame:
malcook/docopt.R
Command-line interface description language for R (http:docopt.org)
malcook/easybuild-easyblocks
Collection of easyblocks that implement support for building and installing software with EasyBuild.
malcook/easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
malcook/easybuild-framework
EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.
malcook/easybuild-wiki
EasyBuild documentation wiki
malcook/filesystem-reporting-tools
Tools to help system administors manage very large file systems. pwalk
malcook/Genrich
Detecting sites of genomic enrichment
malcook/igvShiny
an htmlwidget version of igv, for RStudio and Shiny apps
malcook/Lmod
Lmod: An Environment Module System based on Lua, Reads TCL Modules, Supports a Software Hierarchy
malcook/malcook.github.io
malcook/mpicbg
Fiji module for image transformation and related algorithms
malcook/org-html-themes
How to export Org mode files into awesome HTML in 2 minutes
malcook/Quickomics
Quickomics: exploring omics data in an intuitive, interactive and informative manner
malcook/R_for_Mass_Spectrometry-docs
R for Mass Spectrometry documentation
malcook/ReMapEnrich
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
malcook/rmarkdown
Dynamic Documents for R
malcook/scimax
An emacs starterkit for scientists and engineers
malcook/shinygo
malcook/SlicerWeb
Slicer modules that support web services and web applications
malcook/spack
A flexible package manager designed to support multiple versions, configurations, platforms, and compilers.
malcook/tpp_sandbox
Using The Trans-Proteomic Pipeline (TPP)
malcook/wassermanlab.github.io
malcook/yihui
Personal website of Yihui Xie