maximilianh/cellBrowser

Issues

• Support multiple clustering resolutions from AnnData

  #215 opened 4 years ago by pcm32
  5

• Load examples for scanpy are incorrect and misleading

  #267 opened 4 months ago by GeoffSCollins
  0

• Error in `[.data.frame`(feature.names, , gene.column) : undefined columns selected

  #266 opened 8 months ago by mscheperr
  1

• Issue w/ running cbSeurat: argument "counts" is missing, with no default

  #265 opened a year ago by bugacov
  17

• `scanpy` docs bug still not resolved

  #264 opened a year ago by alam-shahul
  5

• On killing cbScanpyImport due to Out of memory, process exits with 0 exit code

  #263 opened a year ago by pcm32
  1

• --useMtx is ignored if too.big == TRUE in runSeurat.R

  #262 opened 2 years ago by RoganGrant
  6

• Spatial data in cell browser

  #259 opened 2 years ago by cancerGen
  9

• Cannot read single sample name from the matrix

  #258 opened 2 years ago by kevin198930
  3

• [Feature Request] Find Cells by named selection

  #260 opened 2 years ago by alexlenail
  6

• Custom colors for each attribute

  #256 opened 2 years ago by cancerGen
  8

• Cannot find dataset when refreshing

  #257 opened 2 years ago by samfenske
  7

• abstract.html do not working

  #254 opened 2 years ago by yesonse
  8

• How to re-host the website directly without building it once more?

  #226 opened 3 years ago by lijxug
  38

• cache problem of google chrome browser or server httpd setting?

  #255 opened 2 years ago by yesonse
  3

• Question/Issue: Index not showing

  #251 opened 2 years ago by Bhersbach
  28

• Adding multiple count matrix files in the label counts in the config file for the cbBuild

  #241 opened 3 years ago by devashishmohanta
  3

• group related datasets into a hierarchy ending with errors of copying exprMatrix.tsv.gz to itself

  #237 opened 3 years ago by yesonse
  16

• Split view by dataset

  #253 opened 2 years ago by michael-kotliar
  1

• Question - Linking cellBrowser through another web-app with dynamic data selection

  #246 opened 2 years ago by tkakar
  9

• ImportError: cannot import name 'cbImportSeurat2Cli' occurs calling cbImportSeurat from command-line on conda install

  #233 opened 2 years ago by malcook
  19

• quickGenesfile config

  #225 opened 2 years ago by biocaitao
  4

• AnnData conversion no longer grabs var['gene_symbols'] to get gene symbols

  #216 opened 2 years ago by pcm32
  12

• cbImportSeurat does not work with Seurat4.0.0 objects?

  #210 opened 4 years ago by cotedivoir
  15

• os.getLogin() function breaks seurat.py

  #250 opened 2 years ago by RoganGrant
  2

• Special characters in the column names

  #249 opened 2 years ago by AmelZulji
  1

• stop() instead of error() in the cellbrowser.R script?

  #248 opened 2 years ago by tomsing1
  1

• gene expression and proteins together

  #247 opened 2 years ago by mxposed
  4

• semicolons in cell names not properly handled

  #227 opened 3 years ago by dvera
  4

• documentation for scATAC-seq data

  #211 opened 3 years ago by hejing3283
  6

• alert:Could not load mouse_temp_atac/exprMatrix.bin?chr1|3115016|3115356, error undefined

  #242 opened 3 years ago by ckfromCN
  6

• mtx nomenclature in conf file

  #243 opened 3 years ago by PriyankaOyx
  2

• [scATAC-seq]ERROR:root:Cannot download hg38.gencode-34.json

  #232 opened 3 years ago by ckfromCN
  10

• Error in in CreateSeuratObject when running cbSeurat on an expression matrix

  #238 opened 3 years ago by bugacov
  5

• Changing dotsize (radius) of cells in an already built cellbrowser

  #236 opened 3 years ago by redst4r
  5

• Lasso tool or option to rotate UMAP

  #235 opened 3 years ago by shaln
  3

• `view > unsplit` screen with RHS panel selected loses balanced layout

  #234 opened 3 years ago by malcook
  0

• Exporting the gene expression matrix as sparse matrix (cbImportScanpy, cbBuild)?

  #230 opened 3 years ago by redst4r
  4

• Running CBBuild on Autism Data

  #229 opened 3 years ago by itskhurrams
  7

• public instance - allen mouse whole cortex - mismatch between cell expression profiles and their metadata

  #228 opened 3 years ago by dvera
  14

• getDatasetNameFromUrl() in cellBrowser.js converts most datasetName to lowercase

  #219 opened 3 years ago by bugacov
  6

• Cluster labels are not shown when browser has more height than width

  #222 opened 3 years ago by mxposed
  1

• `Edit|Export Selected` not working

  #218 opened 4 years ago by lzx325
  5

• cannot convert float infinity to integer

  #197 opened 4 years ago by Parul-Kudtarkar
  4

• Could not find a dataset when opening index.html file

  #207 opened 4 years ago by frankligy
  7

• Longer/adaptable length drop down needed for layouts

  #214 opened 4 years ago by pcm32
  9

• Another silent error (failure with no error code)

  #213 opened 4 years ago by pcm32
  1

• Scanpy import fails due to fields starting with underscore

  #208 opened 4 years ago by pcm32
  2

• UTF8 in metadata fields doesn't work

  #199 opened 4 years ago by mxposed
  2

• expression coloring slow ... hosting advice?

  #198 opened 4 years ago by Gibbsdavidl
  3