maximilianh
Research Scientist UCSC Genome Browser, Genomics and Single Cell
UCSCSanta Cruz, CA. Sometimes France, Germany.
Pinned Repositories
cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
crisporPaper
Code for the CRISPOR article, all data and code to create figures and analysis
crisporWebsite
All source code of the crispor.org website
knowledger
A DCC-like system to submit data and metadata and keep track of submissions
maxPlot
fast javascript scatter plot library
maxtools
Various command line tools, mostly for bioinformatics, for .tab,.bed,.maf plus various parsers
multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
pubMunch
various tools to download, convert and process the full text of scientific articles
pubMunch3
various tools to download, convert and process the full text of scientific articles
ucscBeacon
A GA4GH Draft Beacon implementation
maximilianh's Repositories
maximilianh/cellBrowser
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
maximilianh/crisporWebsite
All source code of the crispor.org website
maximilianh/pubMunch
various tools to download, convert and process the full text of scientific articles
maximilianh/crisporPaper
Code for the CRISPOR article, all data and code to create figures and analysis
maximilianh/multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
maximilianh/maxtools
Various command line tools, mostly for bioinformatics, for .tab,.bed,.maf plus various parsers
maximilianh/pubMunch3
various tools to download, convert and process the full text of scientific articles
maximilianh/maxPlot
fast javascript scatter plot library
maximilianh/knowledger
A DCC-like system to submit data and metadata and keep track of submissions
maximilianh/acgi
Code for ACGI Ethereum demo
maximilianh/browserInstall
An install script for the UCSC Genome Browser
maximilianh/kentUtils
UCSC command line bioinformatic utilities
maximilianh/repeatBrowser
scripts to create the repeat browser assembly hub
maximilianh/bioconda-recipes
Conda recipes for the bioconda channel.
maximilianh/brca-exchange
Overall management and deployment of the BRCA Exchange web portal and pipeline scripts
maximilianh/browserDocker
UCSC Genome Browser Docker
maximilianh/CHM13
The complete sequence of a human genome
maximilianh/crispy-doom
Crispy Doom is a limit-removing enhanced-resolution Doom source port based on Chocolate Doom.
maximilianh/easy-data
easy access to benchmark datasets
maximilianh/genebrowser
gene table for sspygene
maximilianh/GOANA
maximilianh/intronProspector
Identify putative introns in RNA-Seq alignments
maximilianh/Lindel
maximilianh/open-data-registry
A registry of publicly available datasets on AWS
maximilianh/SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
maximilianh/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
maximilianh/scihub.py
:page_facing_up: Unofficial Python API and command-line tool for sci-hub.io
maximilianh/seurat
R toolkit for single cell genomics
maximilianh/seurat-wrappers
Community-provided extensions to Seurat
maximilianh/URD
URD - Reconstruction of Branching Developmental Trajectories