maximilianh/multiSub
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
PythonGPL-3.0
Stargazers
- AdrianMBarrera
- afonsoguerra@HerpeslabNL
- ahmig@PathoGenOmics-Lab
- amsyuan
- angellicacardozo
- AngieHinrichs@ucscGenomeBrowser
- bedeUniversity of Oxford
- bwlang@bwlang
- charlesfoster
- ColinAvrechSeattle, WA
- corneliusroemer@neherlab @nextstrain
- devindrownFairbanks, Alaska, USA
- embatty
- ethidiumbromide
- friesacDefense Health Agency, @usafsam
- george-githinjiKEMRI-Wellcome Trust Research Programme
- ikesk
- jlorsal
- kapsakcj@theiagen
- karenbobierAferna Bio
- kevinlibuit
- kylegiffin
- lgagne01
- lpmor22FIOCRUZ-BA
- mdperryUniversity of California, Santa Cruz
- nahid18PhD @ USC Mann
- nknox
- phiwegerLeipzig
- rabuono
- replikation@nanozoo and IIMK@UHJ
- russcd
- tomkinscBroad Institute of MIT and Harvard
- txjeUniversity of North Carolina
- virologistMars
- wna-seUppsala University, @NBISweden