ahmig

Bioinformatics | Systems biology | SARS-CoV-2 genome epidemiology & pathogen metabolism reconstruction

@PathoGenOmics-LabValència, Spain

Pinned Repositories

ahmig.github.io
Language:Ruby00
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1.6k 97 1.9k3.2k
misb_training_2024
Master on Integrative Synthetic Biology (MISB) training sessions 2024
Language:Jupyter Notebook10
tcfinder
A lightweight tool to find clusters of samples within a phylogeny.
Language:Rust1 1 00
transcluster
A Snakemake pipeline to find SARS-CoV-2 clusters in a reference phylogeny and estimate their transmission fitness
Language:Python10
VIPERA
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
Language:Python3 1 10