ahmig
Bioinformatics | Systems biology | SARS-CoV-2 genome epidemiology & pathogen metabolism reconstruction
@PathoGenOmics-LabValència, Spain
ahmig's Stars
jakobnissen/alen
Simple terminal alignment viewer
mpdunne/alan
Alignment viewer for linux terminal
ktmeaton/NCBImeta
Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
GenSpectrum/LAPIS
An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2
GenSpectrum/LAPIS-SILO
Sequence Indexing engine for Large Order of genomic data
loculus-project/loculus
An open-source software package to power microbial genomic databases
pathoplexus/pathoplexus
An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
UPHL-BioNGS/Cecret
Reference-based consensus creation
evanpeikon/math_for_compbio
This repository contains math tutorials I created for Bioinformatics and Computational Biology.
husonlab/splitstree6
SplitsTree App
hms-dbmi/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
nf-core/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
enasequence/ena-ftp-downloader
Java based tools for bulk downloading read/analysis files from ENA via FTP or Aspera.
enasequence/enaBrowserTools
A collection of scripts to assist in the retrieval of data from the ENA Browser
bebatut/enasearch
A Python library for interacting with ENA's API
lvkv/whenfs
A FUSE filesystem for your Google calendar
Nextomics/NextPolish
Fast and accurately polish the genome generated by long reads.
drawdb-io/drawdb
Free, simple, and intuitive online database design tool and SQL generator.
bcgsc/abyss
:microscope: Assemble large genomes using short reads
rmhubley/RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
merenlab/anvio
An analysis and visualization platform for 'omics data
TerryCavanagh/VVVVVV
The source code to VVVVVV! http://thelettervsixtim.es/
defold/defold
Defold is a completely free to use game engine for development of desktop, mobile and web games.
vgteam/vg
tools for working with genome variation graphs
a327ex/SNKRX
A replayable arcade shooter where you control a snake of heroes.
flu-crew/smot
Simple Manipulation Of Trees
cmkobel/CompareM2
🦠📇 Microbial genomes-to-report pipeline
potch/unmaintained.tech
No Maintenance Intended
facebook/docusaurus
Easy to maintain open source documentation websites.
flu-crew/parnas
Phylogenetic maximum representation sampling: choosing most representative strains or taxa