/tblastn_exon_stitcher

Need an ORF from an unannotated genome? This script exploits ncbi's ability to tBLASTn against genome assemblies, to get provisional exon sets from BLAST query-hit alignments.

Primary LanguageJupyter Notebook

tblastn_exon_stitcher

Quick/dirty script for concatenating CDS predicted by tblastn

requirements: biopython installed