Pinned Repositories
comparebams
compare bams file using deeptools
evogen_singularity
Nextflow singularity example
genomics_r
R Programming for biologist
intro_conda
mypipeline
nf-core training 2024
nf-training
Training material for https://carpentries-incubator.github.io/workflows-nextflow/
rdc
R data genomics carpentry
RProgBiolData
data for R programming for biologists
vscode-r
A Tutorial for Setting R Development Environment with VScode, Dev Containers, and Docker
workflows-nextflow
Workflow management with Nextflow and nf-core
ggrimes's Repositories
ggrimes/evogen_singularity
Nextflow singularity example
ggrimes/workflows-nextflow
Workflow management with Nextflow and nf-core
ggrimes/genomics_r
R Programming for biologist
ggrimes/mypipeline
nf-core training 2024
ggrimes/vscode-r
A Tutorial for Setting R Development Environment with VScode, Dev Containers, and Docker
ggrimes/wrangling-genomics
nextflow workflow from https://datacarpentry.org/wrangling-genomics/aio.html
ggrimes/2023-10-03-delme
delete this test
ggrimes/applied-ml
ggrimes/Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
ggrimes/configs
Config files used to define parameters specific to compute environments at different Institutions
ggrimes/DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
ggrimes/dnascent_docker
ggrimes/genomics-r-intro
Intro to R and RStudio for Genomics
ggrimes/gitpodtest
gitpodtest
ggrimes/gpt
gpt
ggrimes/llm_rnaseq_pipeline
Nextflow RNA-Seq pipeline generated by Google Bard, Chat-GPT 3.5 & 4
ggrimes/mondrian_nf
Nextflow version of Mondrian
ggrimes/Mr.-Ranedeer-AI-Tutor
A GPT-4 AI Tutor Prompt for customizable personalized learning experiences.
ggrimes/multi-package-containers
Testing building mulled containers for multi-requirement tools.
ggrimes/nanosv
a pipeline for sv calling using ONT
ggrimes/nextflow_eddie
some example to run on eddie
ggrimes/nf-co.re
Code and files for the main nf-core website.
ggrimes/r-shiny-distribution-histogram
This repository contains a Shiny app for visualizing histograms of various probability distributions, including Binomial, Poisson, and Normal distributions. The app allows users to adjust distribution parameters, apply log transformation to the counts, and use zero-inflated distributions.
ggrimes/shell-genomics
Introduction to the Command Line for Genomics
ggrimes/statistical-thinking-public-health
Statistical thinking for public health
ggrimes/the-algorithm
Source code for Twitter's Recommendation Algorithm
ggrimes/vcf2tsv
A simple python script to convert vcf files into tsv files
ggrimes/website
Nextflow public web site
ggrimes/wf-basecalling
ggrimes/wf-human-variation