Pinned Repositories
comparebams
compare bams file using deeptools
evogen_singularity
Nextflow singularity example
genomics_r
R Programming for biologist
intro_conda
mypipeline
nf-core training 2024
nf-training
Training material for https://carpentries-incubator.github.io/workflows-nextflow/
rdc
R data genomics carpentry
RProgBiolData
data for R programming for biologists
vscode-r
A Tutorial for Setting R Development Environment with VScode, Dev Containers, and Docker
workflows-nextflow
Workflow management with Nextflow and nf-core
ggrimes's Repositories
ggrimes/comparebams
compare bams file using deeptools
ggrimes/rdc
R data genomics carpentry
ggrimes/RProgBiolData
data for R programming for biologists
ggrimes/bam_chr
nextflow test
ggrimes/batch_rnaseq_PCA
batch_rnaseq_PCA
ggrimes/bf_deepbigwig
ggrimes/carptest
Carpentries test website
ggrimes/clair-demo
clair-demo
ggrimes/clair_nf
clair nextflow pipeline
ggrimes/clairvoyante_nf
clairvoyante_nf
ggrimes/crispy-chainsaw
Nextflow example workflow
ggrimes/cutesv_nf
clair.py callVarBam --chkpnt_fn ./model --bam_fn testingData/chr21/chr21.bam --ref_fn testingData/chr21/chr21.fa --call_fn chr21.vcf --sampleName HG001 --pysam_for_all_indel_bases --threads 2 --qual 100 --ctgName chr21 --ctgStart 10269870 --ctgEnd 46672937
ggrimes/dc_genomics
setup for data carpentry https://datacarpentry.org/genomics-r-intro/
ggrimes/evogen
evogen test
ggrimes/introduction-to-conda-for-data-scientists
Introduction to Conda for (Data) Scientists
ggrimes/long_read_edgenomics
Long read Genomic data analysis workshop
ggrimes/my-first-binder
my-first-binde
ggrimes/nextflow_binder
nextflow_binder
ggrimes/nf_fastqc
simple fastqc nextflow pipline
ggrimes/nf_tmpdir
nf_tmpdir
ggrimes/nfcoretut
ggrimes/noteable
ggrimes/PRJNA661970
re-analysis of study PRJNA661970 using nfcore-rnaseq version 2.0
ggrimes/r-conda
R and RStudio via conda packages in repo2docker
ggrimes/r_gene_annotation
How to get gene annotation using R
ggrimes/randomtest
ggrimes/run_id
extract run_id from bam files
ggrimes/shell-novice
The Unix Shell
ggrimes/snaketest
ggrimes/template
A blank starting point for new lessons in The Carpentries Incubator