Pinned Repositories
awesome
A curated list of resources that members of our group have found useful
bibliometrics
Bioinformatics-Workshops
Workshops presented by the Gladstone Bioinformatics Core
Interactive-Enrichment-Analysis
A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
rankSummaries
code for the rankSummary analysis. Used for Morris Water Maze analyses
RMeDPower
RMeDPower2
Helping design and analyses of data from repeated measures experiments
scRNA-seq_shiny_app
R Shiny application for scRNA-seq
seqpipeline
targeted-file-expiration
Windows-native scheduled file move and expiration for image acquisition computers
gladstone-institutes's Repositories
gladstone-institutes/Bioinformatics-Workshops
Workshops presented by the Gladstone Bioinformatics Core
gladstone-institutes/Interactive-Enrichment-Analysis
A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
gladstone-institutes/awesome
A curated list of resources that members of our group have found useful
gladstone-institutes/RMeDPower
gladstone-institutes/RMeDPower2
Helping design and analyses of data from repeated measures experiments
gladstone-institutes/scRNA-seq_shiny_app
R Shiny application for scRNA-seq
gladstone-institutes/GB-JL-1189-Jeremy-GEDI
GEDI value cutoff threshold estimation
gladstone-institutes/Hota_et_al_2021_Brm_safeguards_canalization_cardiac_diff
gladstone-institutes/MonkeyPipeline
gladstone-institutes/AlleleAnalyzer_bcft_RT
A software tool for personalized and allele-specific CRISPR editing.
gladstone-institutes/annotate-genes
Filter GO annotations for a list of genes using mygene.info via R
gladstone-institutes/BC-AM-1148
R Shiny application for scRNA-seq
gladstone-institutes/BC-TM-1123-KC
Tamer Mohammed | scRNA-seq
gladstone-institutes/bioinformatics-datasets
public datasets for testing, benchmarking and comparison
gladstone-institutes/bioinformatics-r-functions
Collection of generally useful R functions
gladstone-institutes/C3_R_Bootcamp_Bonus_Day
Slides and materials for the last day of the C3 R bootcamp with topics chosen by the students
gladstone-institutes/GI-bulk-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
gladstone-institutes/git-flight-rules
Flight rules for git
gladstone-institutes/knitr_case_studies
Inference case studies in knitr
gladstone-institutes/MDC-971-KC
HPV type identification
gladstone-institutes/PFOCRInPathwayAnalyses
gladstone-institutes/post-pipeline_RNA-seq_workshop
RNA-seq workshop starting from a matrix of counts, with a **primary focus on linear modeling for differential expression**
gladstone-institutes/r_docker
Docker container for genomics analyses in R.
gladstone-institutes/RASLseqTools
RASLseq FASTQ to RASLprobe counts.
gladstone-institutes/scRNA-seq_shiny_app_dashboard
gladstone-institutes/stancon2018_intro
Materials for StanCon 2018 intro class
gladstone-institutes/stancon2018helsinki_intro
StanCon2018 Helsinki Tutorial
gladstone-institutes/UCSCbrowserPy
gladstone-institutes/wynton-tutorials
Legacy wynton documentation for reference
gladstone-institutes/YH_MN01_NatureNeuroscience_paper
single-nucleus RNA-seq analysis (15 samples)