glebkuznetsov
Co-Founder and CEO @manifoldbio | Harvard Biophysics PhD | Synthetic Biology + ML
@ManifoldBioBoston
Pinned Repositories
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
cognitive_tools
Rough in-progress notes on cognitive tools
dotfiles
my .vimrc file and .vim dir
imdb_list_scraper
Python script for scraping IMDB lists
markdown_watchdog
A script that watches a directory for changes to markdown files, automatically regenerating the .html preview in response to changes.
semanticify
Make a resource quickly understandable by a human, while laying the groundwork for interesting data mining.
ultrasoundsim
Experimenting with Ultrasound simulation software packages
glebkuznetsov's Repositories
glebkuznetsov/ultrasoundsim
Experimenting with Ultrasound simulation software packages
glebkuznetsov/semanticify
Make a resource quickly understandable by a human, while laying the groundwork for interesting data mining.
glebkuznetsov/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
glebkuznetsov/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
glebkuznetsov/dotfiles
my .vimrc file and .vim dir
glebkuznetsov/mascpcr
MASC PCR primer design pipeline
glebkuznetsov/biophys205_final_paper_combinatorial_reprogramming
glebkuznetsov/CNTK
Computational Network Toolkit (CNTK)
glebkuznetsov/cureffi
CureFFI.org
glebkuznetsov/deepdream
glebkuznetsov/demo_project
Basic Django demo application
glebkuznetsov/Dissertate
Beautiful Word and LaTeX dissertation templates.
glebkuznetsov/drb_class_notes
Notes from January 2015 Harvard Developmental and Regenerative Biology class DRB 330qc / DRB331hc
glebkuznetsov/freebarcodes
FREE Divergence Error-Correcting DNA Barcodes
glebkuznetsov/libnano
helpful tools for working with nucleic acids
glebkuznetsov/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
glebkuznetsov/mcadre
metabolic Context-specificity Assessed by Deterministic Reaction Evaluation (mCADRE) for generating draft tissue-specific metabolic models
glebkuznetsov/millstone
Genome engineering and analysis software
glebkuznetsov/mind
a program to predict transcription factor binding sites from single-nucleotide deletion MPRAs
glebkuznetsov/misc_figures
Miscellaneous code to generate figures
glebkuznetsov/misc_scripts
Miscellaneous scripts
glebkuznetsov/optmage
Scripts for designing oligos and primers for MAGE (Multiplex Automated Genome Engineering)
glebkuznetsov/pip-chill
Like pip freeze but just cool
glebkuznetsov/Protocols
Repository for Public Protocols
glebkuznetsov/pydna
Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning in Python and Jupyter notebooks.
glebkuznetsov/recoli57
Supporting code for Ostrov et al., Science, 2016
glebkuznetsov/recoli_c321d_genome_annotation
Dump of scripts and intermediate files used to generate E. coli C321.deltaA genome (Lajoie et al, Science 2013)
glebkuznetsov/remember-me
Automatically exported from code.google.com/p/remember-me
glebkuznetsov/tensorflow
Computation using data flow graphs for scalable machine learning
glebkuznetsov/udacity-tensorflow
Udacity TensorFlow assignments