OpenWorm
An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
International
Pinned Repositories
c302
The c302 framework for generating multiscale network models of C. elegans
CElegansNeuroML
NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302
ChannelWorm2
Tools and curated datasets to build quantitative models of C. elegans ion channels
open-worm-analysis-toolbox
A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.
OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
openworm.github.io
OpenWorm main website
org.geppetto
Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.
owmeta
Unified, simple data access python library for data & facts about C. elegans anatomy
sibernetic
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
wormbrowser
The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans
OpenWorm's Repositories
openworm/OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
openworm/sibernetic
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
openworm/owmeta
Unified, simple data access python library for data & facts about C. elegans anatomy
openworm/c302
The c302 framework for generating multiscale network models of C. elegans
openworm/muscle_model
Model of C elegans body wall muscle based on Boyle & Cohen 2008
openworm/openworm_docs
Documentation for OpenWorm, i.e. docs.openworm.org
openworm/hodgkin_huxley_tutorial
A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
openworm/org.geppetto.frontend
Geppetto Java frontend bundle
openworm/openworm.github.io
OpenWorm main website
openworm/tracker-commons
Compilation of information and code bases related to open-source trackers for C. elegans
openworm/org.geppetto.simulation
Generic simulation bundle for Geppetto
openworm/WormWorx
C. elegans simulator
openworm/geppetto-client
The web client of a Geppetto application
openworm/NeuroPAL
Scripts to analyse and convert NeuroPAL datasets
openworm/.github
The OpenWorm organisation template repository.
openworm/owmeta-core
Core library for owmeta
openworm/JohnsonMailler_MuscleModel
C. elegans muscle model from Johnson & Mailler 2015
openworm/org.geppetto.datasources
openworm/bt-gsoc-2019
End to end process of the Framework including a BitTorrent Client, Access Control and Data Integrity checks.
openworm/CE_locomotion
Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer
openworm/CelegansNeuromechanicalGaitModulation
C elegans Neuromechanical Gait Modulation Model
openworm/ConnectomeToolbox
Information on published connectomics data related to C. elegans
openworm/sibernetic_v3
Cluster code
openworm/wormneuroatlas
Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/
openworm/MetaWorm
openworm/NemaNode
Interactive map of neural connections in the nematode C. elegans. Online at http://nemanode.org.
openworm/NicolettiEtAl2019_NeuronModels
Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)
openworm/NicolettiEtAl2024_MN_IN
C.elegans motor and interneurons (Nicoletti at al. 2024)
openworm/VarshneyEtAl2011
C. elegans connectome analysis
openworm/worm-functional-connectivity