OpenWorm
An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
International
Pinned Repositories
c302
The c302 framework for generating multiscale network models of C. elegans
CElegansNeuroML
NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302
ChannelWorm2
Tools and curated datasets to build quantitative models of C. elegans ion channels
hodgkin_huxley_tutorial
A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
openworm.github.io
OpenWorm main website
org.geppetto
Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.
owmeta
Unified, simple data access python library for data & facts about C. elegans anatomy
sibernetic
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
wormbrowser
The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans
OpenWorm's Repositories
openworm/OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
openworm/sibernetic
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
openworm/c302
The c302 framework for generating multiscale network models of C. elegans
openworm/hodgkin_huxley_tutorial
A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
openworm/muscle_model
Model of C elegans body wall muscle based on Boyle & Cohen 2008
openworm/openworm.github.io
OpenWorm main website
openworm/org.geppetto.frontend
Geppetto Java frontend bundle
openworm/org.geppetto.core
Geppetto core bundle
openworm/openwormbrowser-ios
OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser
openworm/Blender2NeuroML
Conversion script to bring neuron models created in Blender into NeuroML format
openworm/tracker-commons
Compilation of information and code bases related to open-source trackers for C. elegans
openworm/WormWorx
C. elegans simulator
openworm/geppetto-client
The web client of a Geppetto application
openworm/NeuroPAL
Scripts to analyse and convert NeuroPAL datasets
openworm/.github
The OpenWorm organisation template repository.
openworm/ConnectomeToolbox
Information on published connectomics data related to C. elegans
openworm/owmeta-core
Core library for owmeta
openworm/CE_locomotion
Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer
openworm/JohnsonMailler_MuscleModel
C. elegans muscle model from Johnson & Mailler 2015
openworm/openworm.ai
Scripts related to use of LLMs and other AI technology in OpenWorm
openworm/org.geppetto.datasources
openworm/tierpsy-tracker
Multi-Worm Behaviour Tracker. README here:
openworm/wormneuroatlas
Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/
openworm/CelegansNeuromechanicalGaitModulation
C elegans Neuromechanical Gait Modulation Model
openworm/NicolettiEtAl2019_NeuronModels
Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)
openworm/NicolettiEtAl2024_MN_IN
C.elegans motor and interneurons (Nicoletti at al. 2024)
openworm/simulate
Links to online simulations of the worm
openworm/Worm2D
Simulator of 2D worm body models
openworm/Worm3DViewer
Test repository for multiple views of the worm in 3D
openworm/wormpose
WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans