OpenWorm
An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
International
Pinned Repositories
c302
The c302 framework for generating multiscale network models of C. elegans
CElegansNeuroML
NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302
ChannelWorm2
Tools and curated datasets to build quantitative models of C. elegans ion channels
hodgkin_huxley_tutorial
A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
openworm.github.io
OpenWorm main website
org.geppetto
Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.
owmeta
Unified, simple data access python library for data & facts about C. elegans anatomy
sibernetic
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
wormbrowser
The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans
OpenWorm's Repositories
openworm/open-worm-analysis-toolbox
A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.
openworm/CyberElegans
Neuromechanical model of C. Elegans
openworm/openwormbrowser-ios
OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser
openworm/ChannelWorm
Tools and curated datasets to build quantitative models of C. elegans ion channels
openworm/ChannelWorm2
Tools and curated datasets to build quantitative models of C. elegans ion channels
openworm/org.geppetto.solver.sph
PCI SPH Solver bundle for Geppetto
openworm/simple-C-elegans
Minimalist Python code -- based on OpenWorm and the published literature -- for modeling C. elegans neural network dynamics
openworm/behavioral_syntax
behavioral syntax analysis based on the paper of Andre Brown
openworm/org.geppetto.sibernetic
PCI SPH Model Bundle for Geppetto
openworm/neuronal-analysis
Tools to produce, analyse and compare both simulated and recorded neuronal datasets
openworm/OpenData
Repo for Google Summer of Code Open Data Project 2019
openworm/org.geppetto.docs
Repository to host Geppetto documentation
openworm/org.geppetto.simulator.sph
SPH Simulator bundle for Geppetto
openworm/org.wormsim.frontend
WormSim frontend bundle
openworm/org.geppetto.maven
Maven repository for Geppetto
openworm/org.geppetto.samples
Sample simulations for Geppetto
openworm/pharyngeal_muscle_model
C. elegans pharyngeal muscle cell (pm3) model, capable of generating Ca2+ slow action potential (NEURON, NMODL).
openworm/tests
OpenWorm tests across various repos
openworm/YAROM
Yet Another RDF-Object Mapper
openworm/model_completion_dashboard
Model Completion Dashboard
openworm/openworm-scholar
A service providing enhanced notifications of published research in Open Worm
openworm/org.geppetto.frontend.nodejs
Geppetto Node.js backend
openworm/org.geppetto.testbackend
openworm/owcs
openworm/owmeta-modeldb
openworm/owmeta-sciunit
owmeta types for SciUnit and NeuronUnit
openworm/recurrent
Natural language parsing of dates and recurring events
openworm/tierpsy-tracker
Multi-Worm Behaviour Tracker. README here:
openworm/jenkins
openworm/movement_validation_cloud
Previous attempt at a movement validation cloud application