glormph's Stars
percolator/percolator
Semi-supervised learning for peptide identification from shotgun proteomics datasets
MSGFPlus/msgfplus
MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
galaxyproteomics/tools-galaxyp
Galaxy Tool Shed repositories maintained and developed by the GalaxyP community
lehtiolab/proteogenomics-analysis-workflow
IPAW: a Nextflow workflow for proteogenomics
yafeng/proteogenomics_python
python scripts for proteogenomics analysis