Pinned Repositories
305ftw
Garmin forerunner 305 -> Livelox
nf-core-dda-quant-proteomics
Quant proteomics as practiced at Lehtiö lab for NF-core
nf-core-lfquandenser
A proteomics pipeline for labelfree analysis using quandenser and triqler
ddamsproteomics
A Nextflow MS DDA proteomics pipeline
instruments
kantele
Lab proteomics raw and search data management
msstitch
MS proteomics post-processing utilities
nf-labelcheck
Proteomics nextflow labelcheck pipeline with report
proteogenomics-analysis-workflow
IPAW: a Nextflow workflow for proteogenomics
glormph's Repositories
glormph/nf-core-dda-quant-proteomics
Quant proteomics as practiced at Lehtiö lab for NF-core
glormph/nf-core-lfquandenser
A proteomics pipeline for labelfree analysis using quandenser and triqler
glormph/305ftw
Garmin forerunner 305 -> Livelox
glormph/bioconda-recipes
Conda recipes for the bioconda channel.
glormph/celery-windows-pwiz
Celery tasks for mzML conversion on windows platform
glormph/DEqMS
DEqMS is a tool for quantitative proteomic analysis
glormph/glormph.github.io
Test
glormph/multi-package-containers
Testing building mulled containers for multi-requirement tools.
glormph/nbis-site-tools
glormph/nf-core-labelcheck
Proteomics nextflow labelcheck pipeline with report
glormph/orientalyst
Plotting and analyzing orienteering data
glormph/percolator
Semi-supervised learning for peptide identification from shotgun proteomics datasets
glormph/protein-quant
Lina Hultin-Rosenbergs (weighted) protein quant analysis tools, adapted to suit running in Galaxy framework
glormph/proteomics-infrastructure-scripts
Some misc scripts that govern data transfer, etc. at the clin.prot mass spec facility at Scilifelab
glormph/proteomics_configuration
Configuration management for a small Galaxy cluster
glormph/proteomics_deployment
Deploy scripts for Scilifelab proteomics facility
glormph/SpectrumAI
R script to automatically inspect MS2 spectra of single-subsititution peptide identifications
glormph/test-datasets
Test data to be used for automated testing with the nf-core pipelines
glormph/tools
Python package with helper tools for the nf-core community.