AB WT Analysis Pipeline
Installation:
1. Unzip the contents of the package into the directory where you want to
install the package.
2. From the root install directory, enter the following to build the mapping
software:
% make
3. The pipeline is now ready for use.
4. OPTIONAL: Add <installation_dir>/bin to your $PATH environment variable.
Mapping with the pipeline:
bin/split_read_mapper.sh <config file*>
*An example config file is available in doc/
Generating counts:
bin/count_tags.pl
Finding Novel transcribed regions
bin/ntr_finder.sh [-c file*]
*An example is is doc/