googlegenomics/bigquery-examples

Issues

• Update instructions to clarify standard SQL versus legacy SQL

  #42 opened 8 years ago by tomasramanauskas
  8

• Update all uses of BigQuery User-Defined Functions

  #28 opened 9 years ago by deflaux
  0

• Schema link is broken

  #27 opened 9 years ago by gideonite
  3

• understand why the CGI masterVar files have fewer non-reference alleles than the corresponding output from cgatools mkvcf

  #12 opened 9 years ago by deflaux
  1

• Add a schema transformation sample using Hadoop Streaming and the BigQuery Connector

  #21 opened 9 years ago by deflaux
  1

• modify ClinVar schema to utilize repeated fields

  #1 opened 10 years ago by deflaux
  1

• Consider using the full version of ClinVar

  #6 opened 10 years ago by jaredroach
  2

• Please enable Tute annotation access via Google Could Storage

  #24 opened 10 years ago by pgrosu
  2

• update all 1,000 Genomes content to use phase 1 data exported from Variant Store

  #16 opened 10 years ago by deflaux
  1

• Provide more reproducible details on provenance

  #17 opened 10 years ago by jbingham
  2

• Ensure that the Markdown, not RMarkdown, files display by default.

  #19 opened 10 years ago by deflaux
  1

• undercounting bug in gvcf_variants/allele-count.sql

  #18 opened 10 years ago by deflaux
  0

• correct cgi-ref-blocks-mapper.py to also extract records for chrY and chrM

  #11 opened 10 years ago by deflaux
  2

• merge "the same" variant in gvcf_variants and gvcf_variants_expanded

  #15 opened 10 years ago by deflaux
  0

• optimize all queries using FLATTEN

  #13 opened 10 years ago by deflaux
  3

• scrub all queries for IF statements that can be simplified

  #14 opened 10 years ago by deflaux
  0

• Unique keys in 1k genomes

  #5 opened 10 years ago by maxbox51
  1

• Example query: Filtering CMS variants from 1kGenomes data set

  #8 opened 10 years ago by vdhankani
  0

• contig in variants1kG versus chrom in knownGene

  #7 opened 10 years ago by maxbox51
  0