gplee85

gplee85's Stars

• ryangreenj/bioinformatics_tool_recommendation

  Language:Python182

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k624

• LKremer/showTree

  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

  Language:Python308

• tjhwangxiong/TCGAplot

  A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.

  Language:R7114

• junjunlab/ClusterGVis

  One-step to Cluster and Visualize Gene Expression Matrix

  Language:R23120

• whussain2/vGWAS

  This repository contains all the scripts and data used for the manuscript: "Variance-heterogeneity genome-wide mapping for cadmium in wheat revealed novel genomic loci and candidate genes"

  Language:HTML32

• whussain2/R-for-Plant-Breeding

  R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations

  Language:HTML4212

• whussain2/Analysis-pipeline

  Language:HTML3219

• gaynorr/AlphaSimR

  R package for breeding program simulations

  Language:R4318

• tpook92/MoBPS

  Modular Breeding Program Simulator

  Language:R3611

• StefanReuscher/ABHgenotypeR

  The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes

  Language:R77

• SchmidtPaul/dsfair_quarto

  Data Science for Agriculture in R

  Language:JavaScript71

• SushanRu/TASSEL-workshop

  This site contains sample files and instructions for the TASSEL workshop hosted by the UMN Plant Breeding Center.

  Language:R79

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.1k611

• BenjaminNarhMadey/R-Codes-for-Plant-Breeding-Genetics-Statistics-and-Genomics

  This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects

  Language:R62

• kwongj/genome-map

  Draw genome coverage map

  Language:Python1

• ad3002/PyChrDraw

  Chromosome drawing for comparative genomics

  Language:Python21

• cran/RIdeogram

  :exclamation: This is a read-only mirror of the CRAN R package repository. RIdeogram — Drawing SVG Graphics to Visualize and Map Genome-Wide Data on Idiograms

  Language:R81

• hashimotoshumpei/geneSTRUCTURE

  Tool for drawing gene structures from genome annotation files.

  Language:Python1

• showteeth/ggcoverage

  Visualize and annotate genomic coverage with ggplot2

  Language:R22720

• tonsky/FiraCode

  Free monospaced font with programming ligatures

  Language:Clojure77.1k3.1k

• Winnie09/GPTCelltype

  Language:HTML15224

• zotero/zotero

  Zotero is a free, easy-to-use tool to help you collect, organize, annotate, cite, and share your research sources.

  Language:JavaScript10.2k754

• moshi4/pyGenomeViz

  A genome visualization python package for comparative genomics

  Language:Python27422

• tidyverse/ggplot2

  An implementation of the Grammar of Graphics in R

  Language:R6.5k2k

• royfrancis/seqhub

  Guide and links related to bulk and single-cell RNA-Seq experiments.

  Language:TeX1

• bbc/bbplot

  R package that helps create and export ggplot2 charts in the style used by the BBC News data team

  Language:R1.6k268

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.6k167

• thomasp85/plotting_benchmark

  Investigating R graphics performance

  Language:HTML16

• AlbertRapp/3mw_newsletters

  Language:HTML265