Graph Genome Browser Consortium
Group developing a browser to scale to 1,000 genomes and zoom to chromosome scale.
Pinned Repositories
bh19_frontend
This repository serves as a temporary storage for the frontend part developed at the BioHackathon 2019. The starting point is taken from https://github.com/subwaystation/sequenceTubeMap/tree/split.
component_segmentation
Read in ODGI Bin output and identify co-linear components
graph-genome.github.io
Graph Genome Documentation
graph-genomics-review
review article on graph genomics
graph_summarization
Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.
jbrowse-components
Reusable graphical components for genomic data
jbrowsing_graphs
JBrowse1 utiltized on Graph Genomes
MatrixTubeMap
Using a Matrix to show coverage of multiple genomic sequences using a prototype hack of Sequence Tubemap
pipeline
odgi - component_segmentation - Schematize
Schematize
Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.
Graph Genome Browser Consortium's Repositories
graph-genome/Schematize
Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.
graph-genome/graph_summarization
Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.
graph-genome/MatrixTubeMap
Using a Matrix to show coverage of multiple genomic sequences using a prototype hack of Sequence Tubemap
graph-genome/graph-genome.github.io
Graph Genome Documentation
graph-genome/pipeline
odgi - component_segmentation - Schematize
graph-genome/component_segmentation
Read in ODGI Bin output and identify co-linear components
graph-genome/graph-genomics-review
review article on graph genomics
graph-genome/jbrowse-components
Reusable graphical components for genomic data
graph-genome/bh19_frontend
This repository serves as a temporary storage for the frontend part developed at the BioHackathon 2019. The starting point is taken from https://github.com/subwaystation/sequenceTubeMap/tree/split.
graph-genome/jbrowsing_graphs
JBrowse1 utiltized on Graph Genomes
graph-genome/spodgi
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
graph-genome/MoMI-G
Schematize is a Genome Browser for Graph Genomes. It is designed to scale to thousands of individuals and gigabase of sequence. Schematize is a fork of MoMI-G by Toshiyuki Yokoyama.
graph-genome/SPARQL_PLAYGROUND
This repository should host preconstructed SPARQL endpoints serving graphs of the variation graph toolkit via virtuoso backend.
graph-genome/tubeify
This repository serves as a temporary storage for the backend part developed at the BioHackathon 2019.